Top 10 genes with highest correlation to Rv2408/PE24:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2577/- | (cc=0.56) | info on Rv2577/- |
| Rv2459/- | (cc=0.5404) | info on Rv2459/- |
| Rv1038c/esxJ | (cc=0.4985) | info on Rv1038c/esxJ |
| Rv2875/mpt70 | (cc=0.4955) | info on Rv2875/mpt70 |
| Rv2409c/- | (cc=0.4818) | info on Rv2409c/- |
| Rv2634c/PE_PGRS46 | (cc=0.4728) | info on Rv2634c/PE_PGRS46 |
| Rv0873/fadE10 | (cc=0.4723) | info on Rv0873/fadE10 |
| Rv3192/- | (cc=0.4637) | info on Rv3192/- |
| Rv1704c/cycA | (cc=0.4625) | info on Rv1704c/cycA |
| Rv0754/PE_PGRS11 | (cc=0.4594) | info on Rv0754/PE_PGRS11 |
Correlation of Rv2408/PE24 with Rv2459/-
Normalized LFCs for Rv2408/PE24:
(description and provenance of datasets)
| Rv2408/PE24 | Rv2459/- | |
| Fe_supp_jason_reseq | 0.385 | 0.384 |
| low_pH_jason_reseq | -1.752 | -1.335 |
| NO_jason_reseq | -1.016 | -0.273 |
| B6_jason_reseq | -0.122 | -0.685 |
| MHCII_jason_reseq | 0.741 | -0.074 |
| Isoniazid02 | -0.696 | -0.631 |
| Rifampicin4 | -0.198 | 0.181 |
| Ethambutol3 | -0.822 | -0.73 |
| Meropenem3 | -0.979 | -0.042 |
| Vancomycin16 | -0.462 | -0.997 |
| Rv2680_day32 | -0.037 | -0.285 |
| H37Rv_KO_MarP | 0.413 | -0.229 |
| hypoxia_3wks | -0.195 | -0.219 |
| hypoxia_6wks | -0.587 | -0.764 |
| glycerol | 0.051 | -0.149 |
| cholesterol | 0.357 | 0.242 |
| AJ | -0.113 | 0.012 |
| Bibs02 | 0.062 | 0.094 |
| Bibs02c | -0.065 | 0.458 |
| BL6 | 0.094 | 0.399 |
| BL6a | 0.026 | 0.494 |
| BXD01 | -0.1 | -0.628 |
| BXD010 | -0.147 | 0.255 |
| BXD011 | -0.366 | 0.094 |
| BXD03 | -0.228 | -0.02 |
| BXD04 | 0.161 | -0.297 |
| BXD05 | 0.155 | 0.135 |
| BXD06 | -0.128 | -0.127 |
| BXD07 | -0.249 | 0.077 |
| BXD08 | 0.314 | -0.169 |
| BXD09 | -0.26 | -0.013 |
| CAST | -0.437 | -0.526 |
| CCcont | 0.206 | -0.066 |
| DS01 | -0.214 | 0.142 |
| DS02 | 0.038 | 0.265 |
| DS04 | -0.042 | 0.386 |
| DS0c | -0.526 | 0.902 |
| GP01 | 0.382 | 0.161 |
| GP02 | 0.773 | 1.16 |
| GP0c | -0.26 | -0.137 |
| NOD | 0.086 | 1.206 |
| NZO | -0.062 | 0.366 |
| PWK | -0.476 | 0.153 |
| H37Rv_KO_CtpC | 0.035 | 0.453 |
| H37Rv_KO_CtpD | 0.61 | 0.036 |
| H37Rv_KO_Rv1272 | 0.404 | 0.54 |
| H37Rv_KO_SugABC | -1.885 | -0.802 |
| H37Rv_KO_MbtN | -0.428 | -0.02 |
| Trans05 | -0.041 | 0.383 |
| macrophage_unactivated | -0.193 | 0.243 |
| IL1 | 0.475 | 0.362 |
| Rapamycin | 0.565 | 0.018 |
| Tcell | -0.088 | -0.499 |
| GMCSF | -0.539 | 0.079 |
| IFNab | -0.254 | 0.145 |
| IFNg | 0.158 | 0.802 |
| IFNg_GMCSF1 | -0.393 | 0.622 |
| Rv1432_day32 | 1.288 | 0.609 |
| Rv1565c_day32 | 0.063 | -1.205 |
| secA2_input | 0.393 | -0.11 |
| delta_Rv3594 | -0.021 | -0.034 |
| delta_Rv3717 | -0.638 | -0.729 |
| delta_Rv3811 | -0.107 | -0.042 |
| delta_Rv0954 | 0.245 | 0.322 |
| PonA1 | -0.074 | 0.309 |
| EccD1_KO | 1.125 | 0.408 |
| EspI_KO | 0.819 | 0.308 |
| PE35_KO | 1.286 | 0.225 |
| PPE68_KO | 0.851 | -0.074 |
| glycerol2 | 0.8 | 0.761 |
| lignocerate | 1.162 | 0.587 |
| oleate | 0.53 | 0.248 |
| phosphatidylcholine | 0.866 | 0.612 |
| acetate | 0.131 | 0.973 |
| glucAc | 0.503 | 0.579 |
| Rv0950ko | 0.449 | -0.157 |
| Rv1096ko | -0.253 | -0.187 |
| Rv3684ko | -0.825 | -0.698 |
| delta_otsA_trehalose | 0.527 | 0.286 |