TnSeqCorr

Top 10 genes with highest correlation to Rv2408/PE24:

update plotcorrelationlink to info on gene
Rv2577/- (cc=0.56) info on Rv2577/-
Rv2459/- (cc=0.5404) info on Rv2459/-
Rv1038c/esxJ (cc=0.4985) info on Rv1038c/esxJ
Rv2875/mpt70 (cc=0.4955) info on Rv2875/mpt70
Rv2409c/- (cc=0.4818) info on Rv2409c/-
Rv2634c/PE_PGRS46 (cc=0.4728) info on Rv2634c/PE_PGRS46
Rv0873/fadE10 (cc=0.4723) info on Rv0873/fadE10
Rv3192/- (cc=0.4637) info on Rv3192/-
Rv1704c/cycA (cc=0.4625) info on Rv1704c/cycA
Rv0754/PE_PGRS11 (cc=0.4594) info on Rv0754/PE_PGRS11

Correlation of Rv2408/PE24 with Rv1704c/cycA

Normalized LFCs for Rv2408/PE24:
(description and provenance of datasets)
Rv2408/PE24Rv1704c/cycA
Fe_supp_jason_reseq

0.385

0.592

low_pH_jason_reseq

-1.752

-0.597

NO_jason_reseq

-1.016

-0.176

B6_jason_reseq

-0.122

0.185

MHCII_jason_reseq

0.741

0.454

Isoniazid02

-0.696

0.092

Rifampicin4

-0.198

-0.219

Ethambutol3

-0.822

-0.193

Meropenem3

-0.979

0.017

Vancomycin16

-0.462

-0.058

Rv2680_day32

-0.037

-1.102

H37Rv_KO_MarP

0.413

0.0

hypoxia_3wks

-0.195

-0.335

hypoxia_6wks

-0.587

0.063

glycerol

0.051

-0.168

cholesterol

0.357

-0.557

AJ

-0.113

-0.108

Bibs02

0.062

-0.502

Bibs02c

-0.065

0.032

BL6

0.094

-0.168

BL6a

0.026

-0.188

BXD01

-0.1

-0.559

BXD010

-0.147

-0.393

BXD011

-0.366

-0.436

BXD03

-0.228

-0.825

BXD04

0.161

0.19

BXD05

0.155

-0.682

BXD06

-0.128

-0.314

BXD07

-0.249

-0.615

BXD08

0.314

-0.111

BXD09

-0.26

-0.349

CAST

-0.437

-0.349

CCcont

0.206

-0.278

DS01

-0.214

0.238

DS02

0.038

-0.23

DS04

-0.042

0.365

DS0c

-0.526

0.286

GP01

0.382

0.143

GP02

0.773

0.72

GP0c

-0.26

-0.481

NOD

0.086

2.455

NZO

-0.062

-0.061

PWK

-0.476

-0.04

H37Rv_KO_CtpC

0.035

0.193

H37Rv_KO_CtpD

0.61

0.336

H37Rv_KO_Rv1272

0.404

0.0

H37Rv_KO_SugABC

-1.885

-1.253

H37Rv_KO_MbtN

-0.428

0.398

Trans05

-0.041

0.558

macrophage_unactivated

-0.193

-0.385

IL1

0.475

-0.362

Rapamycin

0.565

0.095

Tcell

-0.088

-0.14

GMCSF

-0.539

0.349

IFNab

-0.254

-1.17

IFNg

0.158

0.029

IFNg_GMCSF1

-0.393

0.258

Rv1432_day32

1.288

0.451

Rv1565c_day32

0.063

-0.158

secA2_input

0.393

-0.501

delta_Rv3594

-0.021

0.168

delta_Rv3717

-0.638

0.194

delta_Rv3811

-0.107

0.504

delta_Rv0954

0.245

0.523

PonA1

-0.074

0.32

EccD1_KO

1.125

0.493

EspI_KO

0.819

0.944

PE35_KO

1.286

1.278

PPE68_KO

0.851

1.129

glycerol2

0.8

0.041

lignocerate

1.162

0.623

oleate

0.53

-0.535

phosphatidylcholine

0.866

0.384

acetate

0.131

0.231

glucAc

0.503

0.934

Rv0950ko

0.449

0.712

Rv1096ko

-0.253

0.28

Rv3684ko

-0.825

-0.468

delta_otsA_trehalose

0.527

0.244