Top 10 genes with highest correlation to Rv2408/PE24:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2577/- | (cc=0.56) | info on Rv2577/- |
| Rv2459/- | (cc=0.5404) | info on Rv2459/- |
| Rv1038c/esxJ | (cc=0.4985) | info on Rv1038c/esxJ |
| Rv2875/mpt70 | (cc=0.4955) | info on Rv2875/mpt70 |
| Rv2409c/- | (cc=0.4818) | info on Rv2409c/- |
| Rv2634c/PE_PGRS46 | (cc=0.4728) | info on Rv2634c/PE_PGRS46 |
| Rv0873/fadE10 | (cc=0.4723) | info on Rv0873/fadE10 |
| Rv3192/- | (cc=0.4637) | info on Rv3192/- |
| Rv1704c/cycA | (cc=0.4625) | info on Rv1704c/cycA |
| Rv0754/PE_PGRS11 | (cc=0.4594) | info on Rv0754/PE_PGRS11 |
Correlation of Rv2408/PE24 with Rv2577/-
Normalized LFCs for Rv2408/PE24:
(description and provenance of datasets)
| Rv2408/PE24 | Rv2577/- | |
| Fe_supp_jason_reseq | 0.385 | 0.354 |
| low_pH_jason_reseq | -1.752 | -0.816 |
| NO_jason_reseq | -1.016 | 0.218 |
| B6_jason_reseq | -0.122 | 0.078 |
| MHCII_jason_reseq | 0.741 | 0.366 |
| Isoniazid02 | -0.696 | -1.035 |
| Rifampicin4 | -0.198 | 0.439 |
| Ethambutol3 | -0.822 | -0.212 |
| Meropenem3 | -0.979 | -1.344 |
| Vancomycin16 | -0.462 | -0.393 |
| Rv2680_day32 | -0.037 | 0.214 |
| H37Rv_KO_MarP | 0.413 | 0.459 |
| hypoxia_3wks | -0.195 | 0.056 |
| hypoxia_6wks | -0.587 | -0.182 |
| glycerol | 0.051 | -0.467 |
| cholesterol | 0.357 | 0.31 |
| AJ | -0.113 | 0.439 |
| Bibs02 | 0.062 | 0.229 |
| Bibs02c | -0.065 | 0.409 |
| BL6 | 0.094 | -0.047 |
| BL6a | 0.026 | -0.014 |
| BXD01 | -0.1 | -0.468 |
| BXD010 | -0.147 | -0.13 |
| BXD011 | -0.366 | 0.0 |
| BXD03 | -0.228 | -0.072 |
| BXD04 | 0.161 | -0.717 |
| BXD05 | 0.155 | -0.204 |
| BXD06 | -0.128 | -0.372 |
| BXD07 | -0.249 | -0.542 |
| BXD08 | 0.314 | -0.594 |
| BXD09 | -0.26 | -0.364 |
| CAST | -0.437 | -0.234 |
| CCcont | 0.206 | -0.239 |
| DS01 | -0.214 | 0.137 |
| DS02 | 0.038 | -0.523 |
| DS04 | -0.042 | -0.103 |
| DS0c | -0.526 | -0.099 |
| GP01 | 0.382 | -0.418 |
| GP02 | 0.773 | 0.896 |
| GP0c | -0.26 | 0.214 |
| NOD | 0.086 | -0.519 |
| NZO | -0.062 | 0.198 |
| PWK | -0.476 | 0.431 |
| H37Rv_KO_CtpC | 0.035 | -0.332 |
| H37Rv_KO_CtpD | 0.61 | 0.216 |
| H37Rv_KO_Rv1272 | 0.404 | -0.275 |
| H37Rv_KO_SugABC | -1.885 | -0.71 |
| H37Rv_KO_MbtN | -0.428 | -0.105 |
| Trans05 | -0.041 | -0.278 |
| macrophage_unactivated | -0.193 | -0.234 |
| IL1 | 0.475 | 0.036 |
| Rapamycin | 0.565 | 0.11 |
| Tcell | -0.088 | -0.495 |
| GMCSF | -0.539 | 0.124 |
| IFNab | -0.254 | -0.184 |
| IFNg | 0.158 | -0.163 |
| IFNg_GMCSF1 | -0.393 | -0.478 |
| Rv1432_day32 | 1.288 | 0.933 |
| Rv1565c_day32 | 0.063 | -0.182 |
| secA2_input | 0.393 | 0.064 |
| delta_Rv3594 | -0.021 | 0.125 |
| delta_Rv3717 | -0.638 | -0.248 |
| delta_Rv3811 | -0.107 | -0.66 |
| delta_Rv0954 | 0.245 | -0.056 |
| PonA1 | -0.074 | -0.384 |
| EccD1_KO | 1.125 | 0.158 |
| EspI_KO | 0.819 | 0.314 |
| PE35_KO | 1.286 | 0.368 |
| PPE68_KO | 0.851 | 0.205 |
| glycerol2 | 0.8 | 0.745 |
| lignocerate | 1.162 | 1.157 |
| oleate | 0.53 | 0.133 |
| phosphatidylcholine | 0.866 | 0.926 |
| acetate | 0.131 | 0.84 |
| glucAc | 0.503 | 0.863 |
| Rv0950ko | 0.449 | 0.739 |
| Rv1096ko | -0.253 | 0.739 |
| Rv3684ko | -0.825 | 0.393 |
| delta_otsA_trehalose | 0.527 | 0.753 |