Top 10 genes with highest correlation to Rv2342/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1010/ksgA | (cc=0.6119) | info on Rv1010/ksgA |
| Rv0003/recF | (cc=0.5895) | info on Rv0003/recF |
| Rv1638/uvrA | (cc=0.5661) | info on Rv1638/uvrA |
| Rv2737c/recA | (cc=0.5622) | info on Rv2737c/recA |
| Rv2680/- | (cc=0.514) | info on Rv2680/- |
| Rv1633/uvrB | (cc=0.5015) | info on Rv1633/uvrB |
| Rv3124/moaR1 | (cc=0.4969) | info on Rv3124/moaR1 |
| Rv3193c/- | (cc=0.4926) | info on Rv3193c/- |
| Rv2169c/- | (cc=0.4914) | info on Rv2169c/- |
| Rv2206/- | (cc=0.4896) | info on Rv2206/- |
Correlation of Rv2342/- with Rv2206/-
Normalized LFCs for Rv2342/-:
(description and provenance of datasets)
| Rv2342/- | Rv2206/- | |
| Fe_supp_jason_reseq | 2.014 | 0.316 |
| low_pH_jason_reseq | 1.765 | 5.101 |
| NO_jason_reseq | 2.084 | 0.079 |
| B6_jason_reseq | 0.166 | -0.829 |
| MHCII_jason_reseq | 0.261 | -0.633 |
| Isoniazid02 | -1.455 | -0.563 |
| Rifampicin4 | -3.141 | -0.49 |
| Ethambutol3 | 3.495 | 2.212 |
| Meropenem3 | -0.724 | 0.098 |
| Vancomycin16 | -0.78 | -0.743 |
| Rv2680_day32 | -0.131 | -2.221 |
| H37Rv_KO_MarP | -0.09 | -1.411 |
| hypoxia_3wks | -3.118 | -1.83 |
| hypoxia_6wks | 1.336 | -0.837 |
| glycerol | 2.671 | 2.607 |
| cholesterol | 0.401 | -1.387 |
| AJ | -0.983 | -0.934 |
| Bibs02 | 1.491 | 1.856 |
| Bibs02c | -0.136 | 0.324 |
| BL6 | 1.822 | 0.88 |
| BL6a | 1.643 | 1.555 |
| BXD01 | 1.004 | 1.236 |
| BXD010 | 0.684 | 0.726 |
| BXD011 | 1.145 | 1.293 |
| BXD03 | -0.182 | 1.661 |
| BXD04 | 1.192 | 1.582 |
| BXD05 | 1.654 | 2.23 |
| BXD06 | 0.902 | 0.82 |
| BXD07 | 0.79 | 0.057 |
| BXD08 | 2.327 | 1.018 |
| BXD09 | 1.569 | 1.404 |
| CAST | -0.869 | -1.074 |
| CCcont | 1.698 | 2.354 |
| DS01 | -0.686 | 2.202 |
| DS02 | 1.119 | 1.873 |
| DS04 | 0.232 | 2.228 |
| DS0c | 0.0 | 0.63 |
| GP01 | 0.118 | 1.519 |
| GP02 | -0.083 | 0.387 |
| GP0c | -0.175 | 1.725 |
| NOD | -0.472 | -0.905 |
| NZO | -1.508 | -0.931 |
| PWK | 0.681 | 1.54 |
| H37Rv_KO_CtpC | -1.229 | 2.23 |
| H37Rv_KO_CtpD | 1.815 | -0.11 |
| H37Rv_KO_Rv1272 | 0.284 | 0.317 |
| H37Rv_KO_SugABC | 2.595 | 0.889 |
| H37Rv_KO_MbtN | 2.211 | 2.267 |
| Trans05 | 1.632 | 0.0 |
| macrophage_unactivated | -0.36 | -2.389 |
| IL1 | 0.065 | -3.426 |
| Rapamycin | -0.97 | -2.98 |
| Tcell | 0.906 | -1.58 |
| GMCSF | -1.135 | -0.586 |
| IFNab | -0.641 | -0.671 |
| IFNg | -1.392 | -1.644 |
| IFNg_GMCSF1 | -0.358 | -1.398 |
| Rv1432_day32 | -2.579 | -1.106 |
| Rv1565c_day32 | 0.117 | -2.486 |
| secA2_input | -0.457 | -0.376 |
| delta_Rv3594 | 0.401 | -0.616 |
| delta_Rv3717 | -0.615 | 0.0 |
| delta_Rv3811 | 0.268 | 0.054 |
| delta_Rv0954 | -1.376 | -0.521 |
| PonA1 | -0.083 | -0.522 |
| EccD1_KO | 2.128 | 0.934 |
| EspI_KO | 1.514 | 0.205 |
| PE35_KO | 2.097 | -0.108 |
| PPE68_KO | 2.157 | 0.659 |
| glycerol2 | -2.777 | 0.0 |
| lignocerate | -2.806 | -0.462 |
| oleate | -1.664 | -0.537 |
| phosphatidylcholine | -1.276 | -0.338 |
| acetate | -0.396 | -0.191 |
| glucAc | -0.139 | 0.31 |
| Rv0950ko | 1.583 | 0.238 |
| Rv1096ko | -0.157 | 0.884 |
| Rv3684ko | -0.285 | -0.203 |
| delta_otsA_trehalose | -0.864 | 0.226 |