Top 10 genes with highest correlation to Rv2342/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1010/ksgA | (cc=0.6119) | info on Rv1010/ksgA |
| Rv0003/recF | (cc=0.5895) | info on Rv0003/recF |
| Rv1638/uvrA | (cc=0.5661) | info on Rv1638/uvrA |
| Rv2737c/recA | (cc=0.5622) | info on Rv2737c/recA |
| Rv2680/- | (cc=0.514) | info on Rv2680/- |
| Rv1633/uvrB | (cc=0.5015) | info on Rv1633/uvrB |
| Rv3124/moaR1 | (cc=0.4969) | info on Rv3124/moaR1 |
| Rv3193c/- | (cc=0.4926) | info on Rv3193c/- |
| Rv2169c/- | (cc=0.4914) | info on Rv2169c/- |
| Rv2206/- | (cc=0.4896) | info on Rv2206/- |
Correlation of Rv2342/- with Rv1010/ksgA
Normalized LFCs for Rv2342/-:
(description and provenance of datasets)
| Rv2342/- | Rv1010/ksgA | |
| Fe_supp_jason_reseq | 2.014 | 1.796 |
| low_pH_jason_reseq | 1.765 | 0.0 |
| NO_jason_reseq | 2.084 | 0.362 |
| B6_jason_reseq | 0.166 | 0.0 |
| MHCII_jason_reseq | 0.261 | 0.0 |
| Isoniazid02 | -1.455 | -0.885 |
| Rifampicin4 | -3.141 | -2.708 |
| Ethambutol3 | 3.495 | 2.486 |
| Meropenem3 | -0.724 | -0.497 |
| Vancomycin16 | -0.78 | 0.95 |
| Rv2680_day32 | -0.131 | 0.0 |
| H37Rv_KO_MarP | -0.09 | 2.654 |
| hypoxia_3wks | -3.118 | -1.388 |
| hypoxia_6wks | 1.336 | -0.727 |
| glycerol | 2.671 | 0.992 |
| cholesterol | 0.401 | 1.558 |
| AJ | -0.983 | 0.0 |
| Bibs02 | 1.491 | 0.0 |
| Bibs02c | -0.136 | 0.399 |
| BL6 | 1.822 | 0.125 |
| BL6a | 1.643 | 0.198 |
| BXD01 | 1.004 | 0.13 |
| BXD010 | 0.684 | 0.0 |
| BXD011 | 1.145 | 0.243 |
| BXD03 | -0.182 | 0.573 |
| BXD04 | 1.192 | 0.124 |
| BXD05 | 1.654 | 0.135 |
| BXD06 | 0.902 | 0.469 |
| BXD07 | 0.79 | 0.264 |
| BXD08 | 2.327 | 0.253 |
| BXD09 | 1.569 | 0.14 |
| CAST | -0.869 | 0.0 |
| CCcont | 1.698 | 2.822 |
| DS01 | -0.686 | 0.236 |
| DS02 | 1.119 | 0.0 |
| DS04 | 0.232 | 0.194 |
| DS0c | 0.0 | 0.217 |
| GP01 | 0.118 | 0.0 |
| GP02 | -0.083 | 0.0 |
| GP0c | -0.175 | 0.0 |
| NOD | -0.472 | 0.0 |
| NZO | -1.508 | 0.0 |
| PWK | 0.681 | 0.0 |
| H37Rv_KO_CtpC | -1.229 | 0.162 |
| H37Rv_KO_CtpD | 1.815 | 0.445 |
| H37Rv_KO_Rv1272 | 0.284 | 0.387 |
| H37Rv_KO_SugABC | 2.595 | 0.55 |
| H37Rv_KO_MbtN | 2.211 | 0.747 |
| Trans05 | 1.632 | 0.249 |
| macrophage_unactivated | -0.36 | 0.83 |
| IL1 | 0.065 | 0.409 |
| Rapamycin | -0.97 | 0.0 |
| Tcell | 0.906 | 0.857 |
| GMCSF | -1.135 | 0.0 |
| IFNab | -0.641 | 0.417 |
| IFNg | -1.392 | 0.369 |
| IFNg_GMCSF1 | -0.358 | 0.0 |
| Rv1432_day32 | -2.579 | -0.18 |
| Rv1565c_day32 | 0.117 | 0.199 |
| secA2_input | -0.457 | -0.611 |
| delta_Rv3594 | 0.401 | -0.096 |
| delta_Rv3717 | -0.615 | -0.763 |
| delta_Rv3811 | 0.268 | -0.596 |
| delta_Rv0954 | -1.376 | -0.226 |
| PonA1 | -0.083 | 0.509 |
| EccD1_KO | 2.128 | -0.329 |
| EspI_KO | 1.514 | 0.633 |
| PE35_KO | 2.097 | 2.234 |
| PPE68_KO | 2.157 | 1.661 |
| glycerol2 | -2.777 | -2.36 |
| lignocerate | -2.806 | -2.642 |
| oleate | -1.664 | -2.704 |
| phosphatidylcholine | -1.276 | -2.846 |
| acetate | -0.396 | -0.818 |
| glucAc | -0.139 | -0.462 |
| Rv0950ko | 1.583 | -0.458 |
| Rv1096ko | -0.157 | -0.362 |
| Rv3684ko | -0.285 | -0.937 |
| delta_otsA_trehalose | -0.864 | 0.126 |