Top 10 genes with highest correlation to Rv2312/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3367/PE_PGRS51 | (cc=0.5632) | info on Rv3367/PE_PGRS51 |
| Rv0764c/cyp51 | (cc=0.5365) | info on Rv0764c/cyp51 |
| Rv1676/- | (cc=0.5211) | info on Rv1676/- |
| Rv3366/spoU | (cc=0.5186) | info on Rv3366/spoU |
| Rv1734c/- | (cc=0.5171) | info on Rv1734c/- |
| Rv1866/- | (cc=0.5144) | info on Rv1866/- |
| Rv1087/PE_PGRS21 | (cc=0.5116) | info on Rv1087/PE_PGRS21 |
| Rv2517c/- | (cc=0.5101) | info on Rv2517c/- |
| Rv3065/mmr | (cc=0.4978) | info on Rv3065/mmr |
| Rv0316/- | (cc=0.4977) | info on Rv0316/- |
Correlation of Rv2312/- with Rv3065/mmr
Normalized LFCs for Rv2312/-:
(description and provenance of datasets)
| Rv2312/- | Rv3065/mmr | |
| Fe_supp_jason_reseq | -0.846 | -0.647 |
| low_pH_jason_reseq | -0.842 | -1.335 |
| NO_jason_reseq | -0.667 | -0.911 |
| B6_jason_reseq | 1.113 | -0.65 |
| MHCII_jason_reseq | -1.0 | 0.12 |
| Isoniazid02 | 0.128 | -1.314 |
| Rifampicin4 | -0.152 | -0.301 |
| Ethambutol3 | -0.264 | 0.24 |
| Meropenem3 | -0.327 | -1.063 |
| Vancomycin16 | 0.427 | -1.149 |
| Rv2680_day32 | -0.054 | 0.75 |
| H37Rv_KO_MarP | -0.037 | -0.042 |
| hypoxia_3wks | 0.881 | -1.113 |
| hypoxia_6wks | 0.403 | 0.115 |
| glycerol | -1.561 | -0.53 |
| cholesterol | 0.44 | -0.807 |
| AJ | -0.318 | 0.072 |
| Bibs02 | 0.303 | 0.209 |
| Bibs02c | 0.247 | 0.117 |
| BL6 | -0.369 | -0.318 |
| BL6a | -0.743 | -0.178 |
| BXD01 | -0.352 | -0.435 |
| BXD010 | -1.103 | 0.121 |
| BXD011 | 0.179 | 0.109 |
| BXD03 | -0.479 | -0.5 |
| BXD04 | -0.966 | -0.514 |
| BXD05 | -0.941 | -0.658 |
| BXD06 | -1.053 | -0.417 |
| BXD07 | -1.785 | -1.043 |
| BXD08 | -1.135 | -0.713 |
| BXD09 | -1.848 | -0.439 |
| CAST | 1.425 | 0.482 |
| CCcont | -0.454 | -0.46 |
| DS01 | 0.183 | 0.684 |
| DS02 | 1.171 | 0.315 |
| DS04 | 0.641 | 0.055 |
| DS0c | -0.217 | -0.091 |
| GP01 | 2.0 | 0.21 |
| GP02 | -0.348 | 0.709 |
| GP0c | 0.937 | 0.091 |
| NOD | 0.871 | 0.656 |
| NZO | 2.063 | -0.185 |
| PWK | 0.263 | 0.162 |
| H37Rv_KO_CtpC | 1.763 | 0.285 |
| H37Rv_KO_CtpD | 0.925 | 0.265 |
| H37Rv_KO_Rv1272 | 0.735 | 0.022 |
| H37Rv_KO_SugABC | 1.673 | 0.389 |
| H37Rv_KO_MbtN | 0.631 | 0.271 |
| Trans05 | 1.337 | 0.301 |
| macrophage_unactivated | -0.41 | -1.24 |
| IL1 | -1.7 | -1.531 |
| Rapamycin | -1.274 | -1.344 |
| Tcell | -1.245 | -1.329 |
| GMCSF | -0.721 | -1.65 |
| IFNab | -3.256 | -1.013 |
| IFNg | -0.69 | -1.358 |
| IFNg_GMCSF1 | -2.627 | -0.566 |
| Rv1432_day32 | 4.215 | 0.541 |
| Rv1565c_day32 | 0.855 | -1.061 |
| secA2_input | -0.343 | 0.512 |
| delta_Rv3594 | 0.817 | 0.061 |
| delta_Rv3717 | 0.009 | -0.146 |
| delta_Rv3811 | 1.191 | 0.03 |
| delta_Rv0954 | -0.234 | 0.193 |
| PonA1 | -0.008 | -0.314 |
| EccD1_KO | 0.977 | 0.434 |
| EspI_KO | -0.12 | 1.483 |
| PE35_KO | -0.309 | 0.298 |
| PPE68_KO | -0.809 | 0.035 |
| glycerol2 | 1.037 | 0.551 |
| lignocerate | 1.092 | 0.491 |
| oleate | 1.412 | 0.346 |
| phosphatidylcholine | 1.153 | 0.728 |
| acetate | 0.465 | -0.204 |
| glucAc | 0.467 | 0.637 |
| Rv0950ko | 0.986 | 0.47 |
| Rv1096ko | 1.511 | -0.106 |
| Rv3684ko | 0.884 | 0.029 |
| delta_otsA_trehalose | -0.224 | -0.588 |