Top 10 genes with highest correlation to Rv2312/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3367/PE_PGRS51 | (cc=0.5632) | info on Rv3367/PE_PGRS51 |
| Rv0764c/cyp51 | (cc=0.5365) | info on Rv0764c/cyp51 |
| Rv1676/- | (cc=0.5211) | info on Rv1676/- |
| Rv3366/spoU | (cc=0.5186) | info on Rv3366/spoU |
| Rv1734c/- | (cc=0.5171) | info on Rv1734c/- |
| Rv1866/- | (cc=0.5144) | info on Rv1866/- |
| Rv1087/PE_PGRS21 | (cc=0.5116) | info on Rv1087/PE_PGRS21 |
| Rv2517c/- | (cc=0.5101) | info on Rv2517c/- |
| Rv3065/mmr | (cc=0.4978) | info on Rv3065/mmr |
| Rv0316/- | (cc=0.4977) | info on Rv0316/- |
Correlation of Rv2312/- with Rv0316/-
Normalized LFCs for Rv2312/-:
(description and provenance of datasets)
| Rv2312/- | Rv0316/- | |
| Fe_supp_jason_reseq | -0.846 | -1.37 |
| low_pH_jason_reseq | -0.842 | -0.494 |
| NO_jason_reseq | -0.667 | 0.323 |
| B6_jason_reseq | 1.113 | -0.788 |
| MHCII_jason_reseq | -1.0 | -0.414 |
| Isoniazid02 | 0.128 | 0.633 |
| Rifampicin4 | -0.152 | 1.178 |
| Ethambutol3 | -0.264 | 0.64 |
| Meropenem3 | -0.327 | 0.478 |
| Vancomycin16 | 0.427 | 0.584 |
| Rv2680_day32 | -0.054 | 0.061 |
| H37Rv_KO_MarP | -0.037 | 0.214 |
| hypoxia_3wks | 0.881 | -0.606 |
| hypoxia_6wks | 0.403 | -1.376 |
| glycerol | -1.561 | -0.66 |
| cholesterol | 0.44 | -0.105 |
| AJ | -0.318 | -0.294 |
| Bibs02 | 0.303 | 1.318 |
| Bibs02c | 0.247 | 0.708 |
| BL6 | -0.369 | -1.256 |
| BL6a | -0.743 | -0.954 |
| BXD01 | -0.352 | -1.129 |
| BXD010 | -1.103 | -1.794 |
| BXD011 | 0.179 | -1.351 |
| BXD03 | -0.479 | -0.896 |
| BXD04 | -0.966 | -1.265 |
| BXD05 | -0.941 | -1.351 |
| BXD06 | -1.053 | -1.551 |
| BXD07 | -1.785 | -1.39 |
| BXD08 | -1.135 | -1.288 |
| BXD09 | -1.848 | -1.219 |
| CAST | 1.425 | 0.23 |
| CCcont | -0.454 | -0.951 |
| DS01 | 0.183 | -0.067 |
| DS02 | 1.171 | 1.007 |
| DS04 | 0.641 | 0.586 |
| DS0c | -0.217 | -0.751 |
| GP01 | 2.0 | 0.416 |
| GP02 | -0.348 | 0.104 |
| GP0c | 0.937 | -0.305 |
| NOD | 0.871 | 0.714 |
| NZO | 2.063 | -0.468 |
| PWK | 0.263 | -0.202 |
| H37Rv_KO_CtpC | 1.763 | -0.856 |
| H37Rv_KO_CtpD | 0.925 | 0.752 |
| H37Rv_KO_Rv1272 | 0.735 | -2.517 |
| H37Rv_KO_SugABC | 1.673 | -0.738 |
| H37Rv_KO_MbtN | 0.631 | 0.256 |
| Trans05 | 1.337 | -0.531 |
| macrophage_unactivated | -0.41 | -0.754 |
| IL1 | -1.7 | -1.554 |
| Rapamycin | -1.274 | -1.203 |
| Tcell | -1.245 | -0.779 |
| GMCSF | -0.721 | -1.436 |
| IFNab | -3.256 | -1.025 |
| IFNg | -0.69 | -0.639 |
| IFNg_GMCSF1 | -2.627 | -0.958 |
| Rv1432_day32 | 4.215 | 1.275 |
| Rv1565c_day32 | 0.855 | 0.063 |
| secA2_input | -0.343 | 0.261 |
| delta_Rv3594 | 0.817 | 0.684 |
| delta_Rv3717 | 0.009 | -0.305 |
| delta_Rv3811 | 1.191 | 0.471 |
| delta_Rv0954 | -0.234 | 1.067 |
| PonA1 | -0.008 | 0.892 |
| EccD1_KO | 0.977 | -0.365 |
| EspI_KO | -0.12 | -0.285 |
| PE35_KO | -0.309 | 0.093 |
| PPE68_KO | -0.809 | -0.07 |
| glycerol2 | 1.037 | 0.977 |
| lignocerate | 1.092 | 0.528 |
| oleate | 1.412 | 0.21 |
| phosphatidylcholine | 1.153 | 0.909 |
| acetate | 0.465 | 1.238 |
| glucAc | 0.467 | 0.972 |
| Rv0950ko | 0.986 | 0.778 |
| Rv1096ko | 1.511 | 0.175 |
| Rv3684ko | 0.884 | 0.239 |
| delta_otsA_trehalose | -0.224 | -1.132 |