Top 10 genes with highest correlation to Rv2295/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2913c/- | (cc=0.5199) | info on Rv2913c/- |
| Rv2136c/- | (cc=0.519) | info on Rv2136c/- |
| Rv1135c/PPE16 | (cc=0.4995) | info on Rv1135c/PPE16 |
| Rv3607c/folB | (cc=0.4939) | info on Rv3607c/folB |
| Rv2971/- | (cc=0.4926) | info on Rv2971/- |
| Rv2599/- | (cc=0.4727) | info on Rv2599/- |
| Rv1313c/- | (cc=0.4587) | info on Rv1313c/- |
| Rv3798/- | (cc=0.456) | info on Rv3798/- |
| Rv2089c/pepE | (cc=0.4552) | info on Rv2089c/pepE |
| Rv2174/mptA | (cc=0.4515) | info on Rv2174/mptA |
Correlation of Rv2295/- with Rv2599/-
Normalized LFCs for Rv2295/-:
(description and provenance of datasets)
| Rv2295/- | Rv2599/- | |
| Fe_supp_jason_reseq | -0.469 | -0.624 |
| low_pH_jason_reseq | -0.375 | -0.591 |
| NO_jason_reseq | -0.27 | 0.06 |
| B6_jason_reseq | -0.341 | 0.422 |
| MHCII_jason_reseq | 0.692 | 0.753 |
| Isoniazid02 | 0.183 | 0.084 |
| Rifampicin4 | 0.341 | 0.073 |
| Ethambutol3 | 1.262 | 0.151 |
| Meropenem3 | -0.152 | 0.258 |
| Vancomycin16 | 0.281 | -0.117 |
| Rv2680_day32 | -1.558 | 0.236 |
| H37Rv_KO_MarP | -0.33 | 0.044 |
| hypoxia_3wks | 0.128 | -0.231 |
| hypoxia_6wks | 0.117 | 0.013 |
| glycerol | -0.645 | -0.006 |
| cholesterol | -0.305 | -0.125 |
| AJ | 0.373 | -0.148 |
| Bibs02 | 0.734 | -0.044 |
| Bibs02c | -0.343 | 0.488 |
| BL6 | -0.798 | -0.456 |
| BL6a | -0.261 | -0.042 |
| BXD01 | -0.029 | -0.697 |
| BXD010 | 0.438 | -0.068 |
| BXD011 | 0.34 | 0.149 |
| BXD03 | -0.443 | -0.468 |
| BXD04 | -0.622 | -0.786 |
| BXD05 | 0.13 | -0.15 |
| BXD06 | 0.102 | -0.578 |
| BXD07 | 0.32 | -0.276 |
| BXD08 | -0.488 | -0.838 |
| BXD09 | -0.132 | -0.512 |
| CAST | -0.956 | -0.359 |
| CCcont | -0.737 | -0.439 |
| DS01 | 0.426 | 0.125 |
| DS02 | 0.914 | -0.017 |
| DS04 | 1.126 | 0.219 |
| DS0c | -0.025 | 0.289 |
| GP01 | -0.561 | -0.736 |
| GP02 | -0.228 | 0.344 |
| GP0c | -0.213 | -1.293 |
| NOD | -0.877 | 0.519 |
| NZO | 0.487 | 0.101 |
| PWK | -0.102 | -0.752 |
| H37Rv_KO_CtpC | -0.647 | 0.379 |
| H37Rv_KO_CtpD | 0.386 | -0.695 |
| H37Rv_KO_Rv1272 | -0.843 | -0.767 |
| H37Rv_KO_SugABC | 0.555 | 0.892 |
| H37Rv_KO_MbtN | 0.062 | -0.721 |
| Trans05 | 0.504 | -0.132 |
| macrophage_unactivated | -1.266 | -1.158 |
| IL1 | -0.507 | -1.24 |
| Rapamycin | -0.525 | -1.007 |
| Tcell | -1.131 | -0.762 |
| GMCSF | -0.23 | -0.222 |
| IFNab | -0.813 | -0.707 |
| IFNg | -0.094 | 0.168 |
| IFNg_GMCSF1 | -1.32 | -0.123 |
| Rv1432_day32 | 0.683 | 0.488 |
| Rv1565c_day32 | 0.096 | 0.534 |
| secA2_input | 0.866 | 0.49 |
| delta_Rv3594 | 1.075 | 0.39 |
| delta_Rv3717 | 0.31 | -0.141 |
| delta_Rv3811 | 0.787 | 0.41 |
| delta_Rv0954 | 0.889 | 0.376 |
| PonA1 | 0.891 | 0.489 |
| EccD1_KO | 0.687 | 0.964 |
| EspI_KO | 1.229 | 1.529 |
| PE35_KO | 0.61 | 1.52 |
| PPE68_KO | 1.353 | 0.989 |
| glycerol2 | -0.084 | 0.217 |
| lignocerate | -0.464 | 0.488 |
| oleate | 0.159 | -0.133 |
| phosphatidylcholine | -0.457 | 0.36 |
| acetate | -0.667 | 0.477 |
| glucAc | 0.211 | 0.722 |
| Rv0950ko | 0.326 | 0.648 |
| Rv1096ko | -0.404 | 0.507 |
| Rv3684ko | -1.153 | -0.072 |
| delta_otsA_trehalose | 0.356 | -0.837 |