Top 10 genes with highest correlation to Rv2254c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3480c/- | (cc=0.5516) | info on Rv3480c/- |
| Rv3655c/- | (cc=0.5428) | info on Rv3655c/- |
| Rv0470A/- | (cc=0.5303) | info on Rv0470A/- |
| Rv0965c/- | (cc=0.5201) | info on Rv0965c/- |
| Rv1052/- | (cc=0.5109) | info on Rv1052/- |
| Rv0406c/- | (cc=0.5094) | info on Rv0406c/- |
| Rv3062/ligB | (cc=0.5076) | info on Rv3062/ligB |
| Rv2564/glnQ | (cc=0.5001) | info on Rv2564/glnQ |
| Rv2917/- | (cc=0.4995) | info on Rv2917/- |
| Rv2282c/- | (cc=0.4828) | info on Rv2282c/- |
Correlation of Rv2254c/- with Rv3062/ligB
Normalized LFCs for Rv2254c/-:
(description and provenance of datasets)
| Rv2254c/- | Rv3062/ligB | |
| Fe_supp_jason_reseq | -0.325 | -0.802 |
| low_pH_jason_reseq | 1.151 | 0.564 |
| NO_jason_reseq | 0.795 | 0.095 |
| B6_jason_reseq | 0.97 | 0.82 |
| MHCII_jason_reseq | 1.039 | 0.271 |
| Isoniazid02 | 0.656 | 0.335 |
| Rifampicin4 | 0.252 | 0.742 |
| Ethambutol3 | 2.652 | 1.569 |
| Meropenem3 | 0.984 | 0.392 |
| Vancomycin16 | 0.698 | 0.783 |
| Rv2680_day32 | 0.0 | 0.986 |
| H37Rv_KO_MarP | -0.778 | 0.899 |
| hypoxia_3wks | -1.025 | 0.415 |
| hypoxia_6wks | 0.282 | 0.455 |
| glycerol | 0.064 | 0.246 |
| cholesterol | 0.305 | -0.068 |
| AJ | -0.709 | -0.624 |
| Bibs02 | -0.445 | 0.046 |
| Bibs02c | 0.48 | -0.203 |
| BL6 | -2.156 | -1.337 |
| BL6a | 0.139 | -1.158 |
| BXD01 | -0.531 | -0.209 |
| BXD010 | -0.79 | -1.165 |
| BXD011 | -0.403 | -1.362 |
| BXD03 | -0.855 | -1.281 |
| BXD04 | -1.235 | 0.025 |
| BXD05 | -0.996 | -1.01 |
| BXD06 | -0.311 | -0.855 |
| BXD07 | -1.858 | -0.372 |
| BXD08 | -1.196 | -1.277 |
| BXD09 | -0.415 | -1.115 |
| CAST | 0.195 | -0.499 |
| CCcont | -1.691 | -1.287 |
| DS01 | 0.303 | -0.087 |
| DS02 | 1.336 | 0.473 |
| DS04 | 0.704 | -0.561 |
| DS0c | 0.859 | 0.57 |
| GP01 | -1.166 | -1.757 |
| GP02 | -1.821 | -0.99 |
| GP0c | -1.708 | -1.506 |
| NOD | -1.292 | -0.348 |
| NZO | -1.718 | -0.309 |
| PWK | -0.418 | -0.328 |
| H37Rv_KO_CtpC | 0.039 | -0.965 |
| H37Rv_KO_CtpD | -2.293 | -1.829 |
| H37Rv_KO_Rv1272 | 0.512 | -1.898 |
| H37Rv_KO_SugABC | 1.302 | -0.266 |
| H37Rv_KO_MbtN | -1.654 | -1.194 |
| Trans05 | 0.814 | -0.478 |
| macrophage_unactivated | -0.502 | -0.436 |
| IL1 | -1.264 | -0.148 |
| Rapamycin | -1.307 | -0.479 |
| Tcell | -0.225 | 0.261 |
| GMCSF | 0.42 | -1.154 |
| IFNab | -0.538 | -1.388 |
| IFNg | -0.377 | -1.35 |
| IFNg_GMCSF1 | 0.053 | 0.201 |
| Rv1432_day32 | -3.142 | 1.035 |
| Rv1565c_day32 | 0.0 | 0.589 |
| secA2_input | -0.585 | -0.279 |
| delta_Rv3594 | -1.38 | 0.078 |
| delta_Rv3717 | -1.183 | -0.17 |
| delta_Rv3811 | -0.03 | -1.071 |
| delta_Rv0954 | 0.199 | -0.034 |
| PonA1 | 1.2 | -0.205 |
| EccD1_KO | 1.059 | 1.072 |
| EspI_KO | -1.015 | -0.268 |
| PE35_KO | 0.831 | -0.108 |
| PPE68_KO | 0.48 | 0.173 |
| glycerol2 | -0.168 | 0.231 |
| lignocerate | 0.069 | 0.309 |
| oleate | -0.597 | 0.432 |
| phosphatidylcholine | 0.08 | 0.473 |
| acetate | -0.131 | -0.253 |
| glucAc | -0.762 | -0.193 |
| Rv0950ko | 1.113 | 1.288 |
| Rv1096ko | 1.384 | 1.927 |
| Rv3684ko | 2.044 | 1.569 |
| delta_otsA_trehalose | -0.315 | -0.11 |