Top 10 genes with highest correlation to Rv2250A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2270/lppN | (cc=0.5949) | info on Rv2270/lppN |
| Rv0526/- | (cc=0.5679) | info on Rv0526/- |
| Rv2484c/- | (cc=0.5622) | info on Rv2484c/- |
| Rv3265c/wbbL1 | (cc=0.5381) | info on Rv3265c/wbbL1 |
| Rv0817c/- | (cc=0.523) | info on Rv0817c/- |
| Rv0889c/citA | (cc=0.5197) | info on Rv0889c/citA |
| Rv1773c/- | (cc=0.5099) | info on Rv1773c/- |
| Rv2980/- | (cc=0.498) | info on Rv2980/- |
| Rv3332/nagA | (cc=0.4945) | info on Rv3332/nagA |
| Rv1939/- | (cc=0.4726) | info on Rv1939/- |
Correlation of Rv2250A/- with Rv1939/-
Normalized LFCs for Rv2250A/-:
(description and provenance of datasets)
| Rv2250A/- | Rv1939/- | |
| Fe_supp_jason_reseq | -1.339 | -1.937 |
| low_pH_jason_reseq | -2.397 | 1.032 |
| NO_jason_reseq | 0.643 | 0.383 |
| B6_jason_reseq | 1.98 | -0.487 |
| MHCII_jason_reseq | -1.4 | -0.671 |
| Isoniazid02 | 1.609 | 1.014 |
| Rifampicin4 | 0.555 | 1.097 |
| Ethambutol3 | 0.421 | 0.223 |
| Meropenem3 | -0.153 | 1.052 |
| Vancomycin16 | 1.573 | -0.106 |
| Rv2680_day32 | 1.844 | 1.99 |
| H37Rv_KO_MarP | -0.207 | -0.107 |
| hypoxia_3wks | -1.176 | -0.459 |
| hypoxia_6wks | -1.576 | -1.244 |
| glycerol | -0.214 | -1.309 |
| cholesterol | -0.599 | -0.218 |
| AJ | -1.978 | 0.099 |
| Bibs02 | -1.733 | -2.906 |
| Bibs02c | -3.206 | -1.161 |
| BL6 | -2.156 | -3.238 |
| BL6a | -1.877 | -1.35 |
| BXD01 | -1.301 | -0.888 |
| BXD010 | -1.577 | -3.071 |
| BXD011 | -1.272 | -1.418 |
| BXD03 | -1.5 | -2.669 |
| BXD04 | -2.131 | -1.917 |
| BXD05 | -1.95 | -0.85 |
| BXD06 | -1.644 | -2.122 |
| BXD07 | -2.006 | -2.442 |
| BXD08 | -2.159 | -3.189 |
| BXD09 | -1.332 | -2.695 |
| CAST | -0.572 | 0.232 |
| CCcont | -2.574 | -3.716 |
| DS01 | -3.239 | -1.571 |
| DS02 | -3.151 | -0.739 |
| DS04 | 1.089 | -1.528 |
| DS0c | -3.521 | 0.643 |
| GP01 | -1.702 | -2.556 |
| GP02 | -1.434 | -2.154 |
| GP0c | -2.241 | -2.727 |
| NOD | 1.365 | -1.115 |
| NZO | -1.445 | 0.468 |
| PWK | -2.065 | 0.86 |
| H37Rv_KO_CtpC | -2.354 | -0.901 |
| H37Rv_KO_CtpD | -1.737 | -0.298 |
| H37Rv_KO_Rv1272 | -0.463 | -0.68 |
| H37Rv_KO_SugABC | -1.22 | -0.17 |
| H37Rv_KO_MbtN | -1.493 | 0.312 |
| Trans05 | 0.823 | 0.183 |
| macrophage_unactivated | -3.794 | 2.781 |
| IL1 | -1.293 | 0.0 |
| Rapamycin | -2.526 | -0.491 |
| Tcell | -1.421 | 3.617 |
| GMCSF | -3.174 | 0.729 |
| IFNab | -0.396 | -1.333 |
| IFNg | -2.51 | 0.567 |
| IFNg_GMCSF1 | -0.635 | 1.423 |
| Rv1432_day32 | 0.0 | 0.087 |
| Rv1565c_day32 | 1.322 | 1.309 |
| secA2_input | 0.202 | 2.408 |
| delta_Rv3594 | -0.661 | -2.533 |
| delta_Rv3717 | -1.388 | -0.881 |
| delta_Rv3811 | -3.771 | -0.912 |
| delta_Rv0954 | 1.682 | -1.828 |
| PonA1 | -1.773 | -2.246 |
| EccD1_KO | 3.848 | 2.973 |
| EspI_KO | 1.743 | 3.254 |
| PE35_KO | 3.36 | 1.881 |
| PPE68_KO | 2.038 | 3.257 |
| glycerol2 | -4.496 | -3.357 |
| lignocerate | -4.413 | -2.175 |
| oleate | -3.899 | -1.26 |
| phosphatidylcholine | -4.258 | -1.613 |
| acetate | -6.0 | -1.81 |
| glucAc | -4.351 | -3.434 |
| Rv0950ko | 0.971 | -0.823 |
| Rv1096ko | 0.844 | 1.288 |
| Rv3684ko | -0.727 | -1.877 |
| delta_otsA_trehalose | -2.076 | 0.066 |