Top 10 genes with highest correlation to Rv2250A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2270/lppN | (cc=0.5949) | info on Rv2270/lppN |
| Rv0526/- | (cc=0.5679) | info on Rv0526/- |
| Rv2484c/- | (cc=0.5622) | info on Rv2484c/- |
| Rv3265c/wbbL1 | (cc=0.5381) | info on Rv3265c/wbbL1 |
| Rv0817c/- | (cc=0.523) | info on Rv0817c/- |
| Rv0889c/citA | (cc=0.5197) | info on Rv0889c/citA |
| Rv1773c/- | (cc=0.5099) | info on Rv1773c/- |
| Rv2980/- | (cc=0.498) | info on Rv2980/- |
| Rv3332/nagA | (cc=0.4945) | info on Rv3332/nagA |
| Rv1939/- | (cc=0.4726) | info on Rv1939/- |
Correlation of Rv2250A/- with Rv0817c/-
Normalized LFCs for Rv2250A/-:
(description and provenance of datasets)
| Rv2250A/- | Rv0817c/- | |
| Fe_supp_jason_reseq | -1.339 | -1.397 |
| low_pH_jason_reseq | -2.397 | -0.156 |
| NO_jason_reseq | 0.643 | 0.969 |
| B6_jason_reseq | 1.98 | -1.11 |
| MHCII_jason_reseq | -1.4 | -0.71 |
| Isoniazid02 | 1.609 | 0.528 |
| Rifampicin4 | 0.555 | -0.29 |
| Ethambutol3 | 0.421 | 0.235 |
| Meropenem3 | -0.153 | -0.266 |
| Vancomycin16 | 1.573 | 0.0 |
| Rv2680_day32 | 1.844 | 0.235 |
| H37Rv_KO_MarP | -0.207 | -0.2 |
| hypoxia_3wks | -1.176 | 1.655 |
| hypoxia_6wks | -1.576 | 0.633 |
| glycerol | -0.214 | -0.459 |
| cholesterol | -0.599 | -1.507 |
| AJ | -1.978 | -0.805 |
| Bibs02 | -1.733 | -0.522 |
| Bibs02c | -3.206 | -0.537 |
| BL6 | -2.156 | -1.995 |
| BL6a | -1.877 | -1.263 |
| BXD01 | -1.301 | -0.582 |
| BXD010 | -1.577 | -1.115 |
| BXD011 | -1.272 | -0.71 |
| BXD03 | -1.5 | -1.177 |
| BXD04 | -2.131 | -0.896 |
| BXD05 | -1.95 | -0.802 |
| BXD06 | -1.644 | -0.422 |
| BXD07 | -2.006 | -1.206 |
| BXD08 | -2.159 | -1.756 |
| BXD09 | -1.332 | -1.551 |
| CAST | -0.572 | -0.337 |
| CCcont | -2.574 | -2.382 |
| DS01 | -3.239 | -0.407 |
| DS02 | -3.151 | -0.375 |
| DS04 | 1.089 | 0.852 |
| DS0c | -3.521 | -1.475 |
| GP01 | -1.702 | -1.575 |
| GP02 | -1.434 | -1.244 |
| GP0c | -2.241 | -0.884 |
| NOD | 1.365 | 0.0 |
| NZO | -1.445 | 0.131 |
| PWK | -2.065 | 0.171 |
| H37Rv_KO_CtpC | -2.354 | -0.37 |
| H37Rv_KO_CtpD | -1.737 | -1.103 |
| H37Rv_KO_Rv1272 | -0.463 | -0.362 |
| H37Rv_KO_SugABC | -1.22 | -1.391 |
| H37Rv_KO_MbtN | -1.493 | -1.011 |
| Trans05 | 0.823 | 0.667 |
| macrophage_unactivated | -3.794 | -0.701 |
| IL1 | -1.293 | -0.427 |
| Rapamycin | -2.526 | -1.795 |
| Tcell | -1.421 | -1.277 |
| GMCSF | -3.174 | -1.035 |
| IFNab | -0.396 | -1.466 |
| IFNg | -2.51 | -2.494 |
| IFNg_GMCSF1 | -0.635 | 0.412 |
| Rv1432_day32 | 0.0 | 0.583 |
| Rv1565c_day32 | 1.322 | 0.338 |
| secA2_input | 0.202 | -0.238 |
| delta_Rv3594 | -0.661 | 1.19 |
| delta_Rv3717 | -1.388 | 0.901 |
| delta_Rv3811 | -3.771 | -0.159 |
| delta_Rv0954 | 1.682 | 0.57 |
| PonA1 | -1.773 | 0.594 |
| EccD1_KO | 3.848 | 0.187 |
| EspI_KO | 1.743 | -0.342 |
| PE35_KO | 3.36 | 1.17 |
| PPE68_KO | 2.038 | 0.841 |
| glycerol2 | -4.496 | -1.244 |
| lignocerate | -4.413 | -1.587 |
| oleate | -3.899 | -0.885 |
| phosphatidylcholine | -4.258 | -0.637 |
| acetate | -6.0 | -1.14 |
| glucAc | -4.351 | -1.952 |
| Rv0950ko | 0.971 | -0.395 |
| Rv1096ko | 0.844 | -0.609 |
| Rv3684ko | -0.727 | 0.58 |
| delta_otsA_trehalose | -2.076 | -0.111 |