TnSeqCorr

Top 10 genes with highest correlation to Rv2159c/-:

update plotcorrelationlink to info on gene
Rv2741/PE_PGRS47 (cc=0.5517) info on Rv2741/PE_PGRS47
Rv1838c/vapC13 (cc=0.4861) info on Rv1838c/vapC13
Rv3084/lipR (cc=0.4851) info on Rv3084/lipR
Rv3651/- (cc=0.4821) info on Rv3651/-
Rv3736/- (cc=0.4808) info on Rv3736/-
Rv2628/- (cc=0.4784) info on Rv2628/-
Rv0428c/- (cc=0.4749) info on Rv0428c/-
Rv2490c/PE_PGRS43 (cc=0.4733) info on Rv2490c/PE_PGRS43
Rv1759c/wag22 (cc=0.4681) info on Rv1759c/wag22
Rv3832c/- (cc=0.4586) info on Rv3832c/-

Correlation of Rv2159c/- with Rv2741/PE_PGRS47

Normalized LFCs for Rv2159c/-:
(description and provenance of datasets)
Rv2159c/-Rv2741/PE_PGRS47
Fe_supp_jason_reseq

-0.663

-1.435

low_pH_jason_reseq

-0.482

-1.683

NO_jason_reseq

-0.294

-0.719

B6_jason_reseq

-1.212

0.291

MHCII_jason_reseq

-0.206

1.197

Isoniazid02

-0.214

-0.143

Rifampicin4

0.891

0.225

Ethambutol3

-0.666

0.344

Meropenem3

-0.041

0.43

Vancomycin16

-0.785

0.098

Rv2680_day32

0.098

0.415

H37Rv_KO_MarP

-0.428

-0.251

hypoxia_3wks

-0.183

-0.869

hypoxia_6wks

-1.762

-0.971

glycerol

1.754

-0.105

cholesterol

0.807

0.0

AJ

1.434

0.087

Bibs02

2.105

0.548

Bibs02c

-0.133

0.461

BL6

-0.419

-1.25

BL6a

-0.57

-0.532

BXD01

-0.468

-0.626

BXD010

-1.168

-0.078

BXD011

-0.739

-0.691

BXD03

-0.637

-0.752

BXD04

-0.265

-0.645

BXD05

-0.111

-0.438

BXD06

-0.666

-0.961

BXD07

-0.297

-0.702

BXD08

-0.103

-0.871

BXD09

-0.34

-0.666

CAST

-0.224

0.467

CCcont

-0.182

-1.508

DS01

0.765

0.257

DS02

1.306

0.61

DS04

0.989

0.672

DS0c

-0.211

0.434

GP01

1.236

0.75

GP02

2.055

1.507

GP0c

0.781

-0.028

NOD

-0.197

0.226

NZO

1.341

0.131

PWK

-0.071

0.182

H37Rv_KO_CtpC

0.202

-0.481

H37Rv_KO_CtpD

1.017

0.783

H37Rv_KO_Rv1272

-0.991

0.163

H37Rv_KO_SugABC

-1.371

-0.866

H37Rv_KO_MbtN

-0.028

-0.39

Trans05

-0.406

-0.387

macrophage_unactivated

-0.72

-1.203

IL1

0.466

-0.819

Rapamycin

-0.015

-0.746

Tcell

-0.847

-1.124

GMCSF

0.071

-0.177

IFNab

0.067

-0.834

IFNg

-0.978

-1.577

IFNg_GMCSF1

0.38

0.0

Rv1432_day32

0.566

0.329

Rv1565c_day32

-0.513

-0.392

secA2_input

0.98

0.16

delta_Rv3594

0.835

0.722

delta_Rv3717

-0.181

0.278

delta_Rv3811

1.435

0.181

delta_Rv0954

-0.027

0.168

PonA1

0.895

0.009

EccD1_KO

2.71

0.595

EspI_KO

1.349

0.699

PE35_KO

1.73

0.869

PPE68_KO

1.213

1.165

glycerol2

0.794

-0.673

lignocerate

0.168

-0.905

oleate

0.679

-0.189

phosphatidylcholine

0.326

-0.8

acetate

-0.426

-0.798

glucAc

-0.147

-0.255

Rv0950ko

-0.73

0.35

Rv1096ko

0.639

-0.534

Rv3684ko

0.134

0.92

delta_otsA_trehalose

-0.482

-0.53