Top 10 genes with highest correlation to Rv2123/PPE37:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1527c/pks5 | (cc=0.534) | info on Rv1527c/pks5 |
| Rv1818c/PE_PGRS33 | (cc=0.5296) | info on Rv1818c/PE_PGRS33 |
| Rv1834/lipZ | (cc=0.5206) | info on Rv1834/lipZ |
| Rv1894c/- | (cc=0.516) | info on Rv1894c/- |
| Rv0577/TB27.3 | (cc=0.5093) | info on Rv0577/TB27.3 |
| Rv1735c/- | (cc=0.5002) | info on Rv1735c/- |
| Rv3897c/- | (cc=0.497) | info on Rv3897c/- |
| Rv2489c/- | (cc=0.4832) | info on Rv2489c/- |
| Rv2742c/- | (cc=0.4749) | info on Rv2742c/- |
| Rv2741/PE_PGRS47 | (cc=0.4707) | info on Rv2741/PE_PGRS47 |
Correlation of Rv2123/PPE37 with Rv1894c/-
Normalized LFCs for Rv2123/PPE37:
(description and provenance of datasets)
| Rv2123/PPE37 | Rv1894c/- | |
| Fe_supp_jason_reseq | -0.702 | -0.472 |
| low_pH_jason_reseq | -0.51 | -0.959 |
| NO_jason_reseq | 0.05 | 0.588 |
| B6_jason_reseq | -0.184 | 0.018 |
| MHCII_jason_reseq | 0.434 | 0.616 |
| Isoniazid02 | -0.3 | -0.904 |
| Rifampicin4 | 0.333 | -0.125 |
| Ethambutol3 | -0.531 | -0.181 |
| Meropenem3 | 1.005 | 1.114 |
| Vancomycin16 | -0.334 | -0.695 |
| Rv2680_day32 | 0.916 | -0.345 |
| H37Rv_KO_MarP | -0.241 | 0.058 |
| hypoxia_3wks | -0.056 | -0.283 |
| hypoxia_6wks | 0.535 | 0.079 |
| glycerol | 0.083 | 0.064 |
| cholesterol | -0.583 | 0.043 |
| AJ | 0.24 | -0.061 |
| Bibs02 | -0.951 | 0.083 |
| Bibs02c | 0.685 | -0.059 |
| BL6 | -0.332 | -0.702 |
| BL6a | 0.485 | -0.41 |
| BXD01 | -0.102 | -0.256 |
| BXD010 | -0.795 | -0.792 |
| BXD011 | -0.31 | 0.4 |
| BXD03 | 0.044 | -1.064 |
| BXD04 | -0.825 | -1.142 |
| BXD05 | -0.218 | -0.608 |
| BXD06 | -0.116 | -0.848 |
| BXD07 | -0.146 | -0.978 |
| BXD08 | -0.045 | -0.337 |
| BXD09 | -0.149 | -0.823 |
| CAST | 0.39 | 0.656 |
| CCcont | -0.601 | -1.281 |
| DS01 | 0.209 | 0.175 |
| DS02 | 0.274 | -0.129 |
| DS04 | 1.183 | -0.022 |
| DS0c | 0.071 | -0.233 |
| GP01 | 0.921 | -0.748 |
| GP02 | 0.723 | 0.116 |
| GP0c | 0.618 | -0.767 |
| NOD | 0.444 | 1.357 |
| NZO | 0.129 | 0.244 |
| PWK | -0.189 | 0.392 |
| H37Rv_KO_CtpC | -0.201 | -0.069 |
| H37Rv_KO_CtpD | -0.406 | -0.838 |
| H37Rv_KO_Rv1272 | 0.546 | 0.064 |
| H37Rv_KO_SugABC | 0.492 | 0.722 |
| H37Rv_KO_MbtN | -0.428 | 0.827 |
| Trans05 | 0.404 | 0.568 |
| macrophage_unactivated | -0.48 | -0.884 |
| IL1 | -0.581 | -0.578 |
| Rapamycin | -0.792 | -0.957 |
| Tcell | -0.544 | -0.541 |
| GMCSF | 0.333 | -0.325 |
| IFNab | -0.121 | -0.895 |
| IFNg | -0.732 | -1.269 |
| IFNg_GMCSF1 | -0.082 | 0.06 |
| Rv1432_day32 | 0.145 | 0.13 |
| Rv1565c_day32 | 0.021 | 0.289 |
| secA2_input | 0.614 | -0.009 |
| delta_Rv3594 | 0.6 | 0.217 |
| delta_Rv3717 | 0.401 | 0.019 |
| delta_Rv3811 | 0.134 | 0.311 |
| delta_Rv0954 | 0.05 | -0.19 |
| PonA1 | 1.192 | 0.473 |
| EccD1_KO | 1.131 | 0.191 |
| EspI_KO | 0.428 | 0.202 |
| PE35_KO | 0.306 | 0.289 |
| PPE68_KO | 0.41 | 0.042 |
| glycerol2 | 0.195 | 0.769 |
| lignocerate | 0.404 | 0.418 |
| oleate | 0.238 | 1.127 |
| phosphatidylcholine | 0.373 | 0.973 |
| acetate | 0.027 | -0.495 |
| glucAc | 0.188 | -0.634 |
| Rv0950ko | 1.04 | 0.959 |
| Rv1096ko | 1.074 | 0.576 |
| Rv3684ko | 0.095 | 0.75 |
| delta_otsA_trehalose | 0.596 | 0.739 |