Top 10 genes with highest correlation to Rv2052c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3319/sdhB | (cc=0.6249) | info on Rv3319/sdhB |
| Rv3316/sdhC | (cc=0.5865) | info on Rv3316/sdhC |
| Rv0381c/- | (cc=0.5845) | info on Rv0381c/- |
| Rv1174c/TB8.4 | (cc=0.5696) | info on Rv1174c/TB8.4 |
| Rv3317/sdhD | (cc=0.5649) | info on Rv3317/sdhD |
| Rv3298c/lpqC | (cc=0.523) | info on Rv3298c/lpqC |
| Rv1539/lspA | (cc=0.5047) | info on Rv1539/lspA |
| Rv3197/- | (cc=0.4971) | info on Rv3197/- |
| Rv1235/lpqY | (cc=0.4969) | info on Rv1235/lpqY |
| Rv3591c/- | (cc=0.4956) | info on Rv3591c/- |
Correlation of Rv2052c/- with Rv3317/sdhD
Normalized LFCs for Rv2052c/-:
(description and provenance of datasets)
| Rv2052c/- | Rv3317/sdhD | |
| Fe_supp_jason_reseq | 0.134 | 1.448 |
| low_pH_jason_reseq | 0.142 | 2.039 |
| NO_jason_reseq | 1.457 | 3.46 |
| B6_jason_reseq | 0.384 | -0.637 |
| MHCII_jason_reseq | -0.255 | -2.064 |
| Isoniazid02 | -0.76 | 0.166 |
| Rifampicin4 | -0.119 | 0.273 |
| Ethambutol3 | -0.579 | -0.17 |
| Meropenem3 | -1.181 | 0.558 |
| Vancomycin16 | -0.708 | 0.268 |
| Rv2680_day32 | -1.116 | 0.011 |
| H37Rv_KO_MarP | -0.593 | -2.838 |
| hypoxia_3wks | 0.498 | 0.227 |
| hypoxia_6wks | 0.073 | 0.146 |
| glycerol | -0.038 | 0.23 |
| cholesterol | -0.142 | -0.987 |
| AJ | -0.64 | -2.345 |
| Bibs02 | 0.179 | -1.405 |
| Bibs02c | -0.089 | -0.497 |
| BL6 | -0.623 | -1.478 |
| BL6a | -1.049 | -0.314 |
| BXD01 | -1.368 | -0.43 |
| BXD010 | -0.976 | -0.171 |
| BXD011 | -1.087 | -1.765 |
| BXD03 | -1.169 | -0.936 |
| BXD04 | -0.764 | -0.937 |
| BXD05 | -1.222 | -2.394 |
| BXD06 | -1.623 | -0.632 |
| BXD07 | -1.32 | -0.621 |
| BXD08 | -1.08 | -1.217 |
| BXD09 | -1.607 | -1.401 |
| CAST | -0.514 | 0.646 |
| CCcont | -0.849 | -0.294 |
| DS01 | 0.108 | -0.435 |
| DS02 | 0.02 | 0.257 |
| DS04 | 0.333 | 1.023 |
| DS0c | -0.168 | 0.448 |
| GP01 | -1.037 | -2.861 |
| GP02 | -1.011 | -2.411 |
| GP0c | -1.399 | -1.941 |
| NOD | -1.313 | -0.792 |
| NZO | -1.337 | -1.959 |
| PWK | -0.381 | -0.311 |
| H37Rv_KO_CtpC | 0.379 | 1.044 |
| H37Rv_KO_CtpD | 0.639 | 0.333 |
| H37Rv_KO_Rv1272 | 0.108 | -1.487 |
| H37Rv_KO_SugABC | -0.944 | -1.762 |
| H37Rv_KO_MbtN | -0.177 | -1.563 |
| Trans05 | -0.175 | -2.897 |
| macrophage_unactivated | -0.306 | -0.139 |
| IL1 | 0.816 | 0.279 |
| Rapamycin | 0.218 | -1.132 |
| Tcell | 0.424 | 1.965 |
| GMCSF | 0.539 | 0.248 |
| IFNab | -0.26 | -2.162 |
| IFNg | 0.85 | -0.118 |
| IFNg_GMCSF1 | 0.754 | -1.203 |
| Rv1432_day32 | -1.421 | -2.821 |
| Rv1565c_day32 | -1.194 | -3.609 |
| secA2_input | 0.598 | 1.295 |
| delta_Rv3594 | -0.28 | -0.639 |
| delta_Rv3717 | -0.755 | -2.292 |
| delta_Rv3811 | -0.879 | -1.854 |
| delta_Rv0954 | 0.385 | 1.539 |
| PonA1 | 0.694 | 1.304 |
| EccD1_KO | 0.25 | -0.779 |
| EspI_KO | 0.602 | -0.65 |
| PE35_KO | 0.155 | -0.642 |
| PPE68_KO | -0.058 | -0.729 |
| glycerol2 | -0.391 | -1.799 |
| lignocerate | -0.314 | -1.136 |
| oleate | -0.756 | -1.974 |
| phosphatidylcholine | -0.062 | -0.566 |
| acetate | -0.015 | -0.028 |
| glucAc | -0.143 | -0.327 |
| Rv0950ko | 0.6 | 0.434 |
| Rv1096ko | 0.79 | 0.85 |
| Rv3684ko | -0.098 | 0.029 |
| delta_otsA_trehalose | 1.017 | -0.222 |