Top 10 genes with highest correlation to Rv2052c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3319/sdhB | (cc=0.6249) | info on Rv3319/sdhB |
| Rv3316/sdhC | (cc=0.5865) | info on Rv3316/sdhC |
| Rv0381c/- | (cc=0.5845) | info on Rv0381c/- |
| Rv1174c/TB8.4 | (cc=0.5696) | info on Rv1174c/TB8.4 |
| Rv3317/sdhD | (cc=0.5649) | info on Rv3317/sdhD |
| Rv3298c/lpqC | (cc=0.523) | info on Rv3298c/lpqC |
| Rv1539/lspA | (cc=0.5047) | info on Rv1539/lspA |
| Rv3197/- | (cc=0.4971) | info on Rv3197/- |
| Rv1235/lpqY | (cc=0.4969) | info on Rv1235/lpqY |
| Rv3591c/- | (cc=0.4956) | info on Rv3591c/- |
Correlation of Rv2052c/- with Rv3316/sdhC
Normalized LFCs for Rv2052c/-:
(description and provenance of datasets)
| Rv2052c/- | Rv3316/sdhC | |
| Fe_supp_jason_reseq | 0.134 | -1.506 |
| low_pH_jason_reseq | 0.142 | 2.392 |
| NO_jason_reseq | 1.457 | 4.038 |
| B6_jason_reseq | 0.384 | -0.387 |
| MHCII_jason_reseq | -0.255 | -2.065 |
| Isoniazid02 | -0.76 | 0.902 |
| Rifampicin4 | -0.119 | 0.081 |
| Ethambutol3 | -0.579 | 1.332 |
| Meropenem3 | -1.181 | 0.569 |
| Vancomycin16 | -0.708 | 0.663 |
| Rv2680_day32 | -1.116 | -1.599 |
| H37Rv_KO_MarP | -0.593 | -2.664 |
| hypoxia_3wks | 0.498 | -0.072 |
| hypoxia_6wks | 0.073 | -0.196 |
| glycerol | -0.038 | 0.424 |
| cholesterol | -0.142 | -0.249 |
| AJ | -0.64 | -0.333 |
| Bibs02 | 0.179 | -0.882 |
| Bibs02c | -0.089 | -3.428 |
| BL6 | -0.623 | -1.665 |
| BL6a | -1.049 | -2.469 |
| BXD01 | -1.368 | -1.372 |
| BXD010 | -0.976 | -0.973 |
| BXD011 | -1.087 | -1.077 |
| BXD03 | -1.169 | -2.461 |
| BXD04 | -0.764 | -1.914 |
| BXD05 | -1.222 | -0.995 |
| BXD06 | -1.623 | -1.22 |
| BXD07 | -1.32 | -2.481 |
| BXD08 | -1.08 | -2.497 |
| BXD09 | -1.607 | -0.645 |
| CAST | -0.514 | -0.317 |
| CCcont | -0.849 | -0.868 |
| DS01 | 0.108 | -1.477 |
| DS02 | 0.02 | 0.011 |
| DS04 | 0.333 | 0.741 |
| DS0c | -0.168 | -0.585 |
| GP01 | -1.037 | -2.333 |
| GP02 | -1.011 | -2.569 |
| GP0c | -1.399 | -2.794 |
| NOD | -1.313 | -1.923 |
| NZO | -1.337 | -0.87 |
| PWK | -0.381 | 1.118 |
| H37Rv_KO_CtpC | 0.379 | -0.546 |
| H37Rv_KO_CtpD | 0.639 | 0.225 |
| H37Rv_KO_Rv1272 | 0.108 | -1.903 |
| H37Rv_KO_SugABC | -0.944 | -0.954 |
| H37Rv_KO_MbtN | -0.177 | -1.618 |
| Trans05 | -0.175 | -1.74 |
| macrophage_unactivated | -0.306 | 0.23 |
| IL1 | 0.816 | -0.386 |
| Rapamycin | 0.218 | -0.485 |
| Tcell | 0.424 | 2.561 |
| GMCSF | 0.539 | 2.368 |
| IFNab | -0.26 | -1.01 |
| IFNg | 0.85 | 0.992 |
| IFNg_GMCSF1 | 0.754 | 1.166 |
| Rv1432_day32 | -1.421 | -1.996 |
| Rv1565c_day32 | -1.194 | -1.786 |
| secA2_input | 0.598 | 0.276 |
| delta_Rv3594 | -0.28 | -2.486 |
| delta_Rv3717 | -0.755 | -3.228 |
| delta_Rv3811 | -0.879 | -2.107 |
| delta_Rv0954 | 0.385 | -1.001 |
| PonA1 | 0.694 | -0.364 |
| EccD1_KO | 0.25 | -0.243 |
| EspI_KO | 0.602 | -0.724 |
| PE35_KO | 0.155 | -0.866 |
| PPE68_KO | -0.058 | -0.147 |
| glycerol2 | -0.391 | -1.892 |
| lignocerate | -0.314 | -0.669 |
| oleate | -0.756 | -2.121 |
| phosphatidylcholine | -0.062 | -0.59 |
| acetate | -0.015 | 0.352 |
| glucAc | -0.143 | 0.227 |
| Rv0950ko | 0.6 | 0.874 |
| Rv1096ko | 0.79 | 0.03 |
| Rv3684ko | -0.098 | -0.707 |
| delta_otsA_trehalose | 1.017 | 2.171 |