Top 10 genes with highest correlation to Rv2052c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3319/sdhB | (cc=0.6249) | info on Rv3319/sdhB |
| Rv3316/sdhC | (cc=0.5865) | info on Rv3316/sdhC |
| Rv0381c/- | (cc=0.5845) | info on Rv0381c/- |
| Rv1174c/TB8.4 | (cc=0.5696) | info on Rv1174c/TB8.4 |
| Rv3317/sdhD | (cc=0.5649) | info on Rv3317/sdhD |
| Rv3298c/lpqC | (cc=0.523) | info on Rv3298c/lpqC |
| Rv1539/lspA | (cc=0.5047) | info on Rv1539/lspA |
| Rv3197/- | (cc=0.4971) | info on Rv3197/- |
| Rv1235/lpqY | (cc=0.4969) | info on Rv1235/lpqY |
| Rv3591c/- | (cc=0.4956) | info on Rv3591c/- |
Correlation of Rv2052c/- with Rv1539/lspA
Normalized LFCs for Rv2052c/-:
(description and provenance of datasets)
| Rv2052c/- | Rv1539/lspA | |
| Fe_supp_jason_reseq | 0.134 | 1.994 |
| low_pH_jason_reseq | 0.142 | 0.0 |
| NO_jason_reseq | 1.457 | 0.0 |
| B6_jason_reseq | 0.384 | 0.153 |
| MHCII_jason_reseq | -0.255 | 1.175 |
| Isoniazid02 | -0.76 | -0.682 |
| Rifampicin4 | -0.119 | -1.584 |
| Ethambutol3 | -0.579 | 0.095 |
| Meropenem3 | -1.181 | -0.562 |
| Vancomycin16 | -0.708 | -1.552 |
| Rv2680_day32 | -1.116 | -1.078 |
| H37Rv_KO_MarP | -0.593 | 0.566 |
| hypoxia_3wks | 0.498 | -0.502 |
| hypoxia_6wks | 0.073 | -0.263 |
| glycerol | -0.038 | -0.399 |
| cholesterol | -0.142 | -1.215 |
| AJ | -0.64 | -0.671 |
| Bibs02 | 0.179 | 1.915 |
| Bibs02c | -0.089 | -0.239 |
| BL6 | -0.623 | -1.392 |
| BL6a | -1.049 | -2.204 |
| BXD01 | -1.368 | -1.449 |
| BXD010 | -0.976 | -1.425 |
| BXD011 | -1.087 | -1.069 |
| BXD03 | -1.169 | -1.505 |
| BXD04 | -0.764 | -1.376 |
| BXD05 | -1.222 | -1.497 |
| BXD06 | -1.623 | -1.485 |
| BXD07 | -1.32 | -1.541 |
| BXD08 | -1.08 | -1.48 |
| BXD09 | -1.607 | -1.564 |
| CAST | -0.514 | -1.431 |
| CCcont | -0.849 | -0.231 |
| DS01 | 0.108 | 0.601 |
| DS02 | 0.02 | 0.293 |
| DS04 | 0.333 | 1.727 |
| DS0c | -0.168 | 0.729 |
| GP01 | -1.037 | -1.001 |
| GP02 | -1.011 | -0.698 |
| GP0c | -1.399 | -0.439 |
| NOD | -1.313 | -1.71 |
| NZO | -1.337 | -1.839 |
| PWK | -0.381 | -1.351 |
| H37Rv_KO_CtpC | 0.379 | -1.498 |
| H37Rv_KO_CtpD | 0.639 | -0.366 |
| H37Rv_KO_Rv1272 | 0.108 | -0.972 |
| H37Rv_KO_SugABC | -0.944 | -0.334 |
| H37Rv_KO_MbtN | -0.177 | -0.71 |
| Trans05 | -0.175 | -1.454 |
| macrophage_unactivated | -0.306 | 0.0 |
| IL1 | 0.816 | -0.409 |
| Rapamycin | 0.218 | 0.0 |
| Tcell | 0.424 | 0.0 |
| GMCSF | 0.539 | -0.364 |
| IFNab | -0.26 | -0.417 |
| IFNg | 0.85 | 0.0 |
| IFNg_GMCSF1 | 0.754 | 0.0 |
| Rv1432_day32 | -1.421 | 0.0 |
| Rv1565c_day32 | -1.194 | 0.0 |
| secA2_input | 0.598 | 0.495 |
| delta_Rv3594 | -0.28 | 0.113 |
| delta_Rv3717 | -0.755 | -0.992 |
| delta_Rv3811 | -0.879 | -0.656 |
| delta_Rv0954 | 0.385 | 1.478 |
| PonA1 | 0.694 | 1.769 |
| EccD1_KO | 0.25 | -1.059 |
| EspI_KO | 0.602 | -1.403 |
| PE35_KO | 0.155 | 1.21 |
| PPE68_KO | -0.058 | -0.211 |
| glycerol2 | -0.391 | 0.0 |
| lignocerate | -0.314 | 0.0 |
| oleate | -0.756 | 0.0 |
| phosphatidylcholine | -0.062 | 0.0 |
| acetate | -0.015 | 0.0 |
| glucAc | -0.143 | 0.0 |
| Rv0950ko | 0.6 | 0.651 |
| Rv1096ko | 0.79 | -1.113 |
| Rv3684ko | -0.098 | -0.832 |
| delta_otsA_trehalose | 1.017 | 0.818 |