Top 10 genes with highest correlation to Rv2038c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2147c/- | (cc=0.6834) | info on Rv2147c/- |
| Rv1583c/- | (cc=0.6311) | info on Rv1583c/- |
| Rv1548c/PPE21 | (cc=0.6053) | info on Rv1548c/PPE21 |
| Rv1526c/- | (cc=0.5712) | info on Rv1526c/- |
| Rv3036c/TB22.2 | (cc=0.5468) | info on Rv3036c/TB22.2 |
| Rv1076/lipU | (cc=0.5395) | info on Rv1076/lipU |
| Rv2575/- | (cc=0.5238) | info on Rv2575/- |
| Rv2480c/- | (cc=0.5213) | info on Rv2480c/- |
| Rv0188/- | (cc=0.5166) | info on Rv0188/- |
| Rv2929/- | (cc=0.5144) | info on Rv2929/- |
Correlation of Rv2038c/- with Rv2575/-
Normalized LFCs for Rv2038c/-:
(description and provenance of datasets)
| Rv2038c/- | Rv2575/- | |
| Fe_supp_jason_reseq | -1.699 | -0.357 |
| low_pH_jason_reseq | -0.127 | 0.176 |
| NO_jason_reseq | -0.465 | 0.373 |
| B6_jason_reseq | -2.64 | -1.261 |
| MHCII_jason_reseq | -0.977 | -0.524 |
| Isoniazid02 | 0.115 | 0.285 |
| Rifampicin4 | -0.149 | -0.398 |
| Ethambutol3 | -0.067 | 0.838 |
| Meropenem3 | -0.321 | 0.375 |
| Vancomycin16 | 0.21 | 0.387 |
| Rv2680_day32 | -1.358 | -1.044 |
| H37Rv_KO_MarP | 0.207 | -0.761 |
| hypoxia_3wks | -0.183 | 1.081 |
| hypoxia_6wks | 1.462 | 1.52 |
| glycerol | -1.252 | -1.204 |
| cholesterol | -1.217 | -0.156 |
| AJ | -0.494 | 0.103 |
| Bibs02 | -1.537 | -0.391 |
| Bibs02c | -0.591 | -0.476 |
| BL6 | 1.212 | 1.269 |
| BL6a | 0.106 | 0.618 |
| BXD01 | -0.074 | 1.404 |
| BXD010 | 0.34 | 0.992 |
| BXD011 | 0.888 | 2.068 |
| BXD03 | 0.622 | 0.728 |
| BXD04 | 0.612 | 1.434 |
| BXD05 | 1.52 | 0.724 |
| BXD06 | 0.438 | 0.913 |
| BXD07 | 0.731 | 1.138 |
| BXD08 | 0.849 | 1.16 |
| BXD09 | 0.979 | 1.548 |
| CAST | 0.184 | -0.624 |
| CCcont | 0.764 | 1.381 |
| DS01 | -0.936 | -0.505 |
| DS02 | -1.575 | -1.95 |
| DS04 | -0.225 | -0.526 |
| DS0c | -0.251 | -0.787 |
| GP01 | 1.204 | -0.082 |
| GP02 | 0.544 | 0.804 |
| GP0c | 0.598 | 0.395 |
| NOD | -0.404 | 0.399 |
| NZO | 0.306 | 0.0 |
| PWK | -0.627 | -0.365 |
| H37Rv_KO_CtpC | 0.087 | -0.302 |
| H37Rv_KO_CtpD | 1.034 | 1.574 |
| H37Rv_KO_Rv1272 | 1.002 | 1.069 |
| H37Rv_KO_SugABC | 0.784 | 2.023 |
| H37Rv_KO_MbtN | 1.145 | -0.844 |
| Trans05 | 2.398 | 0.418 |
| macrophage_unactivated | -0.246 | 0.205 |
| IL1 | 1.397 | 1.017 |
| Rapamycin | -0.239 | 0.491 |
| Tcell | 0.544 | 0.241 |
| GMCSF | 0.38 | 0.533 |
| IFNab | 0.834 | 0.085 |
| IFNg | 0.738 | 0.473 |
| IFNg_GMCSF1 | 0.93 | -0.308 |
| Rv1432_day32 | -0.614 | 0.029 |
| Rv1565c_day32 | 0.096 | 0.319 |
| secA2_input | -0.504 | -0.1 |
| delta_Rv3594 | 0.035 | 0.286 |
| delta_Rv3717 | -0.218 | -0.434 |
| delta_Rv3811 | 0.034 | -0.022 |
| delta_Rv0954 | -0.864 | 1.105 |
| PonA1 | -2.363 | -0.354 |
| EccD1_KO | 0.914 | -1.023 |
| EspI_KO | -0.257 | -0.171 |
| PE35_KO | 0.187 | 0.0 |
| PPE68_KO | -0.678 | -0.656 |
| glycerol2 | 0.607 | 0.429 |
| lignocerate | 1.538 | 0.688 |
| oleate | -1.418 | 0.014 |
| phosphatidylcholine | 0.531 | 0.891 |
| acetate | 1.998 | 0.884 |
| glucAc | 1.735 | 0.515 |
| Rv0950ko | -1.049 | 0.166 |
| Rv1096ko | 0.0 | 0.042 |
| Rv3684ko | -0.727 | -0.046 |
| delta_otsA_trehalose | 0.087 | 3.259 |