Top 10 genes with highest correlation to Rv2019/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2237/- | (cc=0.6506) | info on Rv2237/- |
| Rv2008c/- | (cc=0.6496) | info on Rv2008c/- |
| Rv1289/- | (cc=0.6429) | info on Rv1289/- |
| Rv2550c/vapB20 | (cc=0.6143) | info on Rv2550c/vapB20 |
| Rv0488/- | (cc=0.6115) | info on Rv0488/- |
| Rv0789c/- | (cc=0.6029) | info on Rv0789c/- |
| Rv2119/- | (cc=0.6019) | info on Rv2119/- |
| Rv2237A/- | (cc=0.596) | info on Rv2237A/- |
| Rv0963c/- | (cc=0.5944) | info on Rv0963c/- |
| Rv1489A/- | (cc=0.5773) | info on Rv1489A/- |
Correlation of Rv2019/- with Rv2237A/-
Normalized LFCs for Rv2019/-:
(description and provenance of datasets)
| Rv2019/- | Rv2237A/- | |
| Fe_supp_jason_reseq | 0.44 | 1.1 |
| low_pH_jason_reseq | -0.156 | -0.631 |
| NO_jason_reseq | -0.013 | -0.32 |
| B6_jason_reseq | 0.823 | -0.363 |
| MHCII_jason_reseq | 0.456 | -0.119 |
| Isoniazid02 | 0.118 | 0.362 |
| Rifampicin4 | 0.325 | 0.42 |
| Ethambutol3 | -0.124 | 0.275 |
| Meropenem3 | 0.059 | 1.324 |
| Vancomycin16 | 0.273 | -0.146 |
| Rv2680_day32 | 0.594 | -0.978 |
| H37Rv_KO_MarP | -0.807 | -0.181 |
| hypoxia_3wks | -0.845 | -0.606 |
| hypoxia_6wks | 0.578 | -2.552 |
| glycerol | -0.512 | -0.162 |
| cholesterol | 0.244 | -0.957 |
| AJ | -0.373 | -0.171 |
| Bibs02 | -0.021 | -0.011 |
| Bibs02c | -0.635 | -0.634 |
| BL6 | -0.386 | -1.255 |
| BL6a | -0.093 | -1.158 |
| BXD01 | -0.498 | -2.152 |
| BXD010 | 0.09 | -1.848 |
| BXD011 | 0.606 | -1.339 |
| BXD03 | -0.532 | -1.858 |
| BXD04 | -0.494 | -1.646 |
| BXD05 | 0.324 | -2.148 |
| BXD06 | 0.065 | -1.59 |
| BXD07 | -0.054 | -2.937 |
| BXD08 | -0.214 | -1.02 |
| BXD09 | 0.063 | -1.931 |
| CAST | -0.584 | -1.253 |
| CCcont | 0.671 | -1.09 |
| DS01 | 0.474 | 0.599 |
| DS02 | 0.517 | 0.348 |
| DS04 | 0.822 | 0.046 |
| DS0c | -0.702 | 0.55 |
| GP01 | -0.629 | -2.855 |
| GP02 | -0.134 | -2.261 |
| GP0c | 0.009 | -2.818 |
| NOD | 0.068 | -0.965 |
| NZO | -0.046 | 1.238 |
| PWK | 0.044 | -1.147 |
| H37Rv_KO_CtpC | 0.085 | 0.029 |
| H37Rv_KO_CtpD | -0.333 | 1.152 |
| H37Rv_KO_Rv1272 | 1.223 | -0.671 |
| H37Rv_KO_SugABC | 0.041 | -2.615 |
| H37Rv_KO_MbtN | 1.693 | -1.135 |
| Trans05 | 1.087 | -3.449 |
| macrophage_unactivated | -0.83 | -1.657 |
| IL1 | -0.222 | 0.347 |
| Rapamycin | 0.187 | 1.565 |
| Tcell | 0.182 | -0.081 |
| GMCSF | 0.121 | 0.758 |
| IFNab | 0.632 | -0.635 |
| IFNg | -0.444 | -0.877 |
| IFNg_GMCSF1 | -0.468 | -0.157 |
| Rv1432_day32 | 0.055 | 1.645 |
| Rv1565c_day32 | 0.57 | -0.218 |
| secA2_input | -1.367 | -0.194 |
| delta_Rv3594 | 0.838 | 0.376 |
| delta_Rv3717 | -0.186 | -1.828 |
| delta_Rv3811 | 0.697 | -0.528 |
| delta_Rv0954 | -0.151 | 0.318 |
| PonA1 | -0.492 | -1.895 |
| EccD1_KO | 0.927 | 0.148 |
| EspI_KO | 1.03 | 0.864 |
| PE35_KO | 1.52 | 0.957 |
| PPE68_KO | 1.369 | 1.241 |
| glycerol2 | 2.299 | 3.085 |
| lignocerate | 2.763 | 4.586 |
| oleate | -0.062 | 0.196 |
| phosphatidylcholine | 2.346 | 3.931 |
| acetate | 3.72 | 5.94 |
| glucAc | 2.122 | 4.505 |
| Rv0950ko | 0.748 | 0.1 |
| Rv1096ko | -0.461 | -0.504 |
| Rv3684ko | -0.196 | -1.88 |
| delta_otsA_trehalose | 0.21 | 4.101 |