Top 10 genes with highest correlation to Rv2019/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2237/- | (cc=0.6506) | info on Rv2237/- |
| Rv2008c/- | (cc=0.6496) | info on Rv2008c/- |
| Rv1289/- | (cc=0.6429) | info on Rv1289/- |
| Rv2550c/vapB20 | (cc=0.6143) | info on Rv2550c/vapB20 |
| Rv0488/- | (cc=0.6115) | info on Rv0488/- |
| Rv0789c/- | (cc=0.6029) | info on Rv0789c/- |
| Rv2119/- | (cc=0.6019) | info on Rv2119/- |
| Rv2237A/- | (cc=0.596) | info on Rv2237A/- |
| Rv0963c/- | (cc=0.5944) | info on Rv0963c/- |
| Rv1489A/- | (cc=0.5773) | info on Rv1489A/- |
Correlation of Rv2019/- with Rv2008c/-
Normalized LFCs for Rv2019/-:
(description and provenance of datasets)
| Rv2019/- | Rv2008c/- | |
| Fe_supp_jason_reseq | 0.44 | -1.301 |
| low_pH_jason_reseq | -0.156 | -0.611 |
| NO_jason_reseq | -0.013 | -0.627 |
| B6_jason_reseq | 0.823 | -0.118 |
| MHCII_jason_reseq | 0.456 | -0.4 |
| Isoniazid02 | 0.118 | 0.031 |
| Rifampicin4 | 0.325 | -0.366 |
| Ethambutol3 | -0.124 | -0.193 |
| Meropenem3 | 0.059 | -0.053 |
| Vancomycin16 | 0.273 | -0.236 |
| Rv2680_day32 | 0.594 | 1.045 |
| H37Rv_KO_MarP | -0.807 | -0.735 |
| hypoxia_3wks | -0.845 | -0.75 |
| hypoxia_6wks | 0.578 | 0.292 |
| glycerol | -0.512 | -0.208 |
| cholesterol | 0.244 | 0.28 |
| AJ | -0.373 | 0.074 |
| Bibs02 | -0.021 | -0.85 |
| Bibs02c | -0.635 | -1.32 |
| BL6 | -0.386 | -0.063 |
| BL6a | -0.093 | -0.776 |
| BXD01 | -0.498 | -0.822 |
| BXD010 | 0.09 | 0.081 |
| BXD011 | 0.606 | -0.131 |
| BXD03 | -0.532 | -0.596 |
| BXD04 | -0.494 | -0.399 |
| BXD05 | 0.324 | -0.292 |
| BXD06 | 0.065 | -0.555 |
| BXD07 | -0.054 | 0.171 |
| BXD08 | -0.214 | -0.689 |
| BXD09 | 0.063 | -0.023 |
| CAST | -0.584 | -0.237 |
| CCcont | 0.671 | -0.181 |
| DS01 | 0.474 | 0.0 |
| DS02 | 0.517 | 0.391 |
| DS04 | 0.822 | 0.427 |
| DS0c | -0.702 | -0.072 |
| GP01 | -0.629 | 1.002 |
| GP02 | -0.134 | -0.969 |
| GP0c | 0.009 | -0.82 |
| NOD | 0.068 | 0.927 |
| NZO | -0.046 | 0.157 |
| PWK | 0.044 | -0.065 |
| H37Rv_KO_CtpC | 0.085 | -0.32 |
| H37Rv_KO_CtpD | -0.333 | 1.119 |
| H37Rv_KO_Rv1272 | 1.223 | -0.171 |
| H37Rv_KO_SugABC | 0.041 | 0.192 |
| H37Rv_KO_MbtN | 1.693 | -0.31 |
| Trans05 | 1.087 | 0.568 |
| macrophage_unactivated | -0.83 | -0.641 |
| IL1 | -0.222 | -0.365 |
| Rapamycin | 0.187 | -0.377 |
| Tcell | 0.182 | -0.156 |
| GMCSF | 0.121 | 0.356 |
| IFNab | 0.632 | -0.296 |
| IFNg | -0.444 | 0.692 |
| IFNg_GMCSF1 | -0.468 | -1.087 |
| Rv1432_day32 | 0.055 | 1.006 |
| Rv1565c_day32 | 0.57 | -0.392 |
| secA2_input | -1.367 | -0.526 |
| delta_Rv3594 | 0.838 | 0.226 |
| delta_Rv3717 | -0.186 | -0.145 |
| delta_Rv3811 | 0.697 | 0.498 |
| delta_Rv0954 | -0.151 | -0.028 |
| PonA1 | -0.492 | -1.031 |
| EccD1_KO | 0.927 | 0.701 |
| EspI_KO | 1.03 | 0.764 |
| PE35_KO | 1.52 | 0.621 |
| PPE68_KO | 1.369 | 1.113 |
| glycerol2 | 2.299 | 1.516 |
| lignocerate | 2.763 | 2.125 |
| oleate | -0.062 | -0.713 |
| phosphatidylcholine | 2.346 | 1.279 |
| acetate | 3.72 | 1.992 |
| glucAc | 2.122 | 2.131 |
| Rv0950ko | 0.748 | 0.416 |
| Rv1096ko | -0.461 | 0.335 |
| Rv3684ko | -0.196 | 1.015 |
| delta_otsA_trehalose | 0.21 | 0.414 |