Top 10 genes with highest correlation to Rv2010/vapC15:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3069/- | (cc=0.5865) | info on Rv3069/- |
| Rv2322c/rocD1 | (cc=0.5313) | info on Rv2322c/rocD1 |
| Rv3622c/PE32 | (cc=0.5081) | info on Rv3622c/PE32 |
| Rv2628/- | (cc=0.4979) | info on Rv2628/- |
| Rv2313c/- | (cc=0.497) | info on Rv2313c/- |
| Rv2458/mmuM | (cc=0.4932) | info on Rv2458/mmuM |
| Rv0330c/- | (cc=0.4813) | info on Rv0330c/- |
| Rv1899c/lppD | (cc=0.4723) | info on Rv1899c/lppD |
| Rv1148c/- | (cc=0.4721) | info on Rv1148c/- |
| Rv2688c/- | (cc=0.4566) | info on Rv2688c/- |
Correlation of Rv2010/vapC15 with Rv2322c/rocD1
Normalized LFCs for Rv2010/vapC15:
(description and provenance of datasets)
| Rv2010/vapC15 | Rv2322c/rocD1 | |
| Fe_supp_jason_reseq | -0.161 | -0.286 |
| low_pH_jason_reseq | 0.214 | -1.819 |
| NO_jason_reseq | 0.0 | 0.52 |
| B6_jason_reseq | -0.023 | 1.266 |
| MHCII_jason_reseq | -0.247 | 1.341 |
| Isoniazid02 | -1.924 | -0.866 |
| Rifampicin4 | -1.809 | -1.305 |
| Ethambutol3 | -1.902 | -1.036 |
| Meropenem3 | -1.904 | -1.68 |
| Vancomycin16 | -1.531 | -1.0 |
| Rv2680_day32 | -0.969 | 0.517 |
| H37Rv_KO_MarP | 0.213 | 1.017 |
| hypoxia_3wks | -0.339 | 0.0 |
| hypoxia_6wks | -0.958 | 0.159 |
| glycerol | -0.034 | -0.607 |
| cholesterol | -0.149 | -0.517 |
| AJ | 0.239 | -0.306 |
| Bibs02 | -0.419 | 0.0 |
| Bibs02c | -0.208 | 0.37 |
| BL6 | -0.176 | -0.165 |
| BL6a | -1.136 | -0.746 |
| BXD01 | -1.314 | -1.817 |
| BXD010 | -1.555 | -2.265 |
| BXD011 | -1.343 | -1.65 |
| BXD03 | -1.295 | -2.731 |
| BXD04 | -1.412 | -2.014 |
| BXD05 | -1.577 | -2.026 |
| BXD06 | -1.497 | -1.608 |
| BXD07 | -0.571 | -2.084 |
| BXD08 | -0.81 | -1.438 |
| BXD09 | -0.615 | -2.288 |
| CAST | -0.332 | -0.063 |
| CCcont | -2.214 | -1.559 |
| DS01 | -0.378 | -0.424 |
| DS02 | -0.6 | 0.145 |
| DS04 | -0.156 | 0.516 |
| DS0c | -1.062 | -1.089 |
| GP01 | -1.117 | -0.432 |
| GP02 | -0.133 | -1.039 |
| GP0c | 0.056 | 0.82 |
| NOD | 0.104 | 0.931 |
| NZO | -0.998 | -0.084 |
| PWK | -1.091 | 0.5 |
| H37Rv_KO_CtpC | -1.514 | -0.045 |
| H37Rv_KO_CtpD | -0.918 | -0.053 |
| H37Rv_KO_Rv1272 | -0.198 | -0.805 |
| H37Rv_KO_SugABC | 0.517 | 1.365 |
| H37Rv_KO_MbtN | -2.206 | -1.748 |
| Trans05 | 0.177 | -0.492 |
| macrophage_unactivated | 0.145 | 1.222 |
| IL1 | 0.899 | -0.341 |
| Rapamycin | 0.813 | -0.353 |
| Tcell | 1.342 | 1.782 |
| GMCSF | -0.19 | -0.304 |
| IFNab | 0.559 | -0.729 |
| IFNg | 0.959 | 0.286 |
| IFNg_GMCSF1 | 0.742 | 2.385 |
| Rv1432_day32 | 0.707 | 0.18 |
| Rv1565c_day32 | 1.54 | 0.218 |
| secA2_input | 1.39 | 0.238 |
| delta_Rv3594 | -0.881 | -1.312 |
| delta_Rv3717 | -0.839 | -1.457 |
| delta_Rv3811 | 0.342 | -0.852 |
| delta_Rv0954 | 0.037 | 0.69 |
| PonA1 | -0.446 | -0.089 |
| EccD1_KO | 1.536 | 0.293 |
| EspI_KO | 1.138 | 0.171 |
| PE35_KO | -0.306 | -0.68 |
| PPE68_KO | 0.422 | -0.099 |
| glycerol2 | -0.331 | 0.331 |
| lignocerate | -0.887 | -0.343 |
| oleate | 0.641 | -0.4 |
| phosphatidylcholine | -0.265 | 0.088 |
| acetate | -1.012 | -0.535 |
| glucAc | -1.882 | 0.216 |
| Rv0950ko | -0.184 | 0.684 |
| Rv1096ko | -0.856 | -0.332 |
| Rv3684ko | -0.999 | 1.798 |
| delta_otsA_trehalose | 0.004 | 0.382 |