Top 10 genes with highest correlation to Rv2010/vapC15:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3069/- | (cc=0.5865) | info on Rv3069/- |
| Rv2322c/rocD1 | (cc=0.5313) | info on Rv2322c/rocD1 |
| Rv3622c/PE32 | (cc=0.5081) | info on Rv3622c/PE32 |
| Rv2628/- | (cc=0.4979) | info on Rv2628/- |
| Rv2313c/- | (cc=0.497) | info on Rv2313c/- |
| Rv2458/mmuM | (cc=0.4932) | info on Rv2458/mmuM |
| Rv0330c/- | (cc=0.4813) | info on Rv0330c/- |
| Rv1899c/lppD | (cc=0.4723) | info on Rv1899c/lppD |
| Rv1148c/- | (cc=0.4721) | info on Rv1148c/- |
| Rv2688c/- | (cc=0.4566) | info on Rv2688c/- |
Correlation of Rv2010/vapC15 with Rv3069/-
Normalized LFCs for Rv2010/vapC15:
(description and provenance of datasets)
| Rv2010/vapC15 | Rv3069/- | |
| Fe_supp_jason_reseq | -0.161 | -1.525 |
| low_pH_jason_reseq | 0.214 | 1.111 |
| NO_jason_reseq | 0.0 | 1.297 |
| B6_jason_reseq | -0.023 | 0.619 |
| MHCII_jason_reseq | -0.247 | 1.495 |
| Isoniazid02 | -1.924 | -1.008 |
| Rifampicin4 | -1.809 | -0.252 |
| Ethambutol3 | -1.902 | -0.755 |
| Meropenem3 | -1.904 | -0.182 |
| Vancomycin16 | -1.531 | -0.621 |
| Rv2680_day32 | -0.969 | -0.51 |
| H37Rv_KO_MarP | 0.213 | 0.192 |
| hypoxia_3wks | -0.339 | -0.072 |
| hypoxia_6wks | -0.958 | 0.177 |
| glycerol | -0.034 | 0.285 |
| cholesterol | -0.149 | -0.383 |
| AJ | 0.239 | 0.419 |
| Bibs02 | -0.419 | 0.0 |
| Bibs02c | -0.208 | 0.13 |
| BL6 | -0.176 | -0.323 |
| BL6a | -1.136 | -0.181 |
| BXD01 | -1.314 | -0.851 |
| BXD010 | -1.555 | -1.639 |
| BXD011 | -1.343 | -0.678 |
| BXD03 | -1.295 | -1.268 |
| BXD04 | -1.412 | -1.815 |
| BXD05 | -1.577 | -1.323 |
| BXD06 | -1.497 | -0.494 |
| BXD07 | -0.571 | -0.737 |
| BXD08 | -0.81 | -1.247 |
| BXD09 | -0.615 | -1.018 |
| CAST | -0.332 | 0.073 |
| CCcont | -2.214 | -1.539 |
| DS01 | -0.378 | -0.01 |
| DS02 | -0.6 | 0.2 |
| DS04 | -0.156 | 0.129 |
| DS0c | -1.062 | 0.416 |
| GP01 | -1.117 | 1.214 |
| GP02 | -0.133 | 1.65 |
| GP0c | 0.056 | 0.68 |
| NOD | 0.104 | -0.76 |
| NZO | -0.998 | 0.036 |
| PWK | -1.091 | 0.063 |
| H37Rv_KO_CtpC | -1.514 | -0.248 |
| H37Rv_KO_CtpD | -0.918 | -2.98 |
| H37Rv_KO_Rv1272 | -0.198 | -0.39 |
| H37Rv_KO_SugABC | 0.517 | -1.097 |
| H37Rv_KO_MbtN | -2.206 | -1.025 |
| Trans05 | 0.177 | 0.152 |
| macrophage_unactivated | 0.145 | 1.297 |
| IL1 | 0.899 | 1.536 |
| Rapamycin | 0.813 | 0.865 |
| Tcell | 1.342 | 1.87 |
| GMCSF | -0.19 | 0.449 |
| IFNab | 0.559 | 0.729 |
| IFNg | 0.959 | 0.171 |
| IFNg_GMCSF1 | 0.742 | 2.262 |
| Rv1432_day32 | 0.707 | 0.249 |
| Rv1565c_day32 | 1.54 | 1.652 |
| secA2_input | 1.39 | -1.565 |
| delta_Rv3594 | -0.881 | -0.968 |
| delta_Rv3717 | -0.839 | -0.396 |
| delta_Rv3811 | 0.342 | 0.079 |
| delta_Rv0954 | 0.037 | 0.738 |
| PonA1 | -0.446 | 0.299 |
| EccD1_KO | 1.536 | 1.799 |
| EspI_KO | 1.138 | 1.517 |
| PE35_KO | -0.306 | 2.252 |
| PPE68_KO | 0.422 | 1.987 |
| glycerol2 | -0.331 | 0.025 |
| lignocerate | -0.887 | -0.565 |
| oleate | 0.641 | 0.496 |
| phosphatidylcholine | -0.265 | 0.013 |
| acetate | -1.012 | -1.275 |
| glucAc | -1.882 | -1.298 |
| Rv0950ko | -0.184 | -0.274 |
| Rv1096ko | -0.856 | 0.872 |
| Rv3684ko | -0.999 | -1.618 |
| delta_otsA_trehalose | 0.004 | -0.087 |