Top 10 genes with highest correlation to Rv2001/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0820/phoT | (cc=0.5868) | info on Rv0820/phoT |
| Rv0930/pstA1 | (cc=0.5824) | info on Rv0930/pstA1 |
| Rv0928/pstS3 | (cc=0.5453) | info on Rv0928/pstS3 |
| Rv3050c/- | (cc=0.5401) | info on Rv3050c/- |
| Rv0929/pstC2 | (cc=0.5394) | info on Rv0929/pstC2 |
| Rv3831/- | (cc=0.52) | info on Rv3831/- |
| Rv1925/fadD31 | (cc=0.5168) | info on Rv1925/fadD31 |
| Rv3218/- | (cc=0.5152) | info on Rv3218/- |
| Rv3210c/- | (cc=0.5088) | info on Rv3210c/- |
| Rv0924c/mntH | (cc=0.5071) | info on Rv0924c/mntH |
Correlation of Rv2001/- with Rv3050c/-
Normalized LFCs for Rv2001/-:
(description and provenance of datasets)
| Rv2001/- | Rv3050c/- | |
| Fe_supp_jason_reseq | 0.054 | -1.053 |
| low_pH_jason_reseq | -1.022 | 1.193 |
| NO_jason_reseq | 0.176 | 0.522 |
| B6_jason_reseq | 0.326 | -2.547 |
| MHCII_jason_reseq | 0.05 | -1.955 |
| Isoniazid02 | -0.244 | -0.063 |
| Rifampicin4 | -0.498 | -2.594 |
| Ethambutol3 | -0.505 | -0.612 |
| Meropenem3 | -0.497 | -0.918 |
| Vancomycin16 | -0.117 | -1.496 |
| Rv2680_day32 | 2.509 | 1.932 |
| H37Rv_KO_MarP | 0.182 | 0.906 |
| hypoxia_3wks | 0.0 | 1.611 |
| hypoxia_6wks | -0.739 | 2.7 |
| glycerol | 0.941 | 1.104 |
| cholesterol | 0.532 | -0.098 |
| AJ | 0.318 | 0.541 |
| Bibs02 | 1.423 | 0.115 |
| Bibs02c | 0.511 | 0.258 |
| BL6 | 0.045 | 2.934 |
| BL6a | 1.164 | 4.475 |
| BXD01 | 1.396 | 3.241 |
| BXD010 | 1.04 | 3.787 |
| BXD011 | 1.553 | 5.572 |
| BXD03 | -0.185 | 3.365 |
| BXD04 | 1.055 | 2.343 |
| BXD05 | 1.059 | 3.473 |
| BXD06 | 1.203 | 3.983 |
| BXD07 | 1.632 | 3.042 |
| BXD08 | 0.506 | 3.65 |
| BXD09 | 1.266 | 4.687 |
| CAST | 0.123 | -0.501 |
| CCcont | 0.51 | 2.452 |
| DS01 | 0.927 | -0.926 |
| DS02 | -0.082 | -0.852 |
| DS04 | 0.104 | 2.503 |
| DS0c | 1.01 | 0.616 |
| GP01 | 0.4 | 3.843 |
| GP02 | 1.292 | 1.738 |
| GP0c | 1.493 | 3.849 |
| NOD | 1.175 | -0.151 |
| NZO | -0.273 | -0.433 |
| PWK | 0.237 | -0.274 |
| H37Rv_KO_CtpC | 1.192 | 1.177 |
| H37Rv_KO_CtpD | 1.752 | 1.634 |
| H37Rv_KO_Rv1272 | 1.097 | 3.492 |
| H37Rv_KO_SugABC | 0.813 | 4.142 |
| H37Rv_KO_MbtN | -0.495 | 2.344 |
| Trans05 | 0.375 | 4.016 |
| macrophage_unactivated | -0.11 | 0.063 |
| IL1 | -0.73 | 0.291 |
| Rapamycin | 0.209 | 1.019 |
| Tcell | 0.635 | 2.255 |
| GMCSF | 0.09 | -0.573 |
| IFNab | -0.051 | 0.599 |
| IFNg | 1.016 | -1.227 |
| IFNg_GMCSF1 | -0.581 | -0.61 |
| Rv1432_day32 | 0.611 | 5.592 |
| Rv1565c_day32 | -0.799 | 0.458 |
| secA2_input | 0.266 | 0.321 |
| delta_Rv3594 | 0.551 | 1.42 |
| delta_Rv3717 | 0.561 | 3.259 |
| delta_Rv3811 | 0.016 | 0.932 |
| delta_Rv0954 | -1.084 | -1.765 |
| PonA1 | -0.332 | -1.855 |
| EccD1_KO | -0.855 | -2.072 |
| EspI_KO | -1.041 | -3.274 |
| PE35_KO | -0.05 | -1.613 |
| PPE68_KO | -0.054 | -1.261 |
| glycerol2 | -0.706 | -3.636 |
| lignocerate | 0.022 | -2.568 |
| oleate | -0.027 | -3.374 |
| phosphatidylcholine | 0.052 | -3.892 |
| acetate | 0.062 | -1.584 |
| glucAc | -0.079 | -0.723 |
| Rv0950ko | 0.476 | -0.874 |
| Rv1096ko | -0.597 | -1.384 |
| Rv3684ko | 0.406 | 1.952 |
| delta_otsA_trehalose | 0.623 | -0.519 |