Top 10 genes with highest correlation to Rv2001/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0820/phoT | (cc=0.5868) | info on Rv0820/phoT |
| Rv0930/pstA1 | (cc=0.5824) | info on Rv0930/pstA1 |
| Rv0928/pstS3 | (cc=0.5453) | info on Rv0928/pstS3 |
| Rv3050c/- | (cc=0.5401) | info on Rv3050c/- |
| Rv0929/pstC2 | (cc=0.5394) | info on Rv0929/pstC2 |
| Rv3831/- | (cc=0.52) | info on Rv3831/- |
| Rv1925/fadD31 | (cc=0.5168) | info on Rv1925/fadD31 |
| Rv3218/- | (cc=0.5152) | info on Rv3218/- |
| Rv3210c/- | (cc=0.5088) | info on Rv3210c/- |
| Rv0924c/mntH | (cc=0.5071) | info on Rv0924c/mntH |
Correlation of Rv2001/- with Rv0930/pstA1
Normalized LFCs for Rv2001/-:
(description and provenance of datasets)
| Rv2001/- | Rv0930/pstA1 | |
| Fe_supp_jason_reseq | 0.054 | -3.511 |
| low_pH_jason_reseq | -1.022 | 1.514 |
| NO_jason_reseq | 0.176 | -4.528 |
| B6_jason_reseq | 0.326 | 0.559 |
| MHCII_jason_reseq | 0.05 | 0.542 |
| Isoniazid02 | -0.244 | -0.895 |
| Rifampicin4 | -0.498 | -2.475 |
| Ethambutol3 | -0.505 | -0.804 |
| Meropenem3 | -0.497 | -1.095 |
| Vancomycin16 | -0.117 | -0.873 |
| Rv2680_day32 | 2.509 | 4.124 |
| H37Rv_KO_MarP | 0.182 | -1.709 |
| hypoxia_3wks | 0.0 | -4.797 |
| hypoxia_6wks | -0.739 | -0.643 |
| glycerol | 0.941 | 2.384 |
| cholesterol | 0.532 | 3.675 |
| AJ | 0.318 | 2.151 |
| Bibs02 | 1.423 | 2.099 |
| Bibs02c | 0.511 | 3.109 |
| BL6 | 0.045 | 5.861 |
| BL6a | 1.164 | 6.0 |
| BXD01 | 1.396 | 6.0 |
| BXD010 | 1.04 | 6.0 |
| BXD011 | 1.553 | 6.0 |
| BXD03 | -0.185 | 5.702 |
| BXD04 | 1.055 | 6.0 |
| BXD05 | 1.059 | 6.0 |
| BXD06 | 1.203 | 6.0 |
| BXD07 | 1.632 | 6.0 |
| BXD08 | 0.506 | 6.0 |
| BXD09 | 1.266 | 6.0 |
| CAST | 0.123 | 3.707 |
| CCcont | 0.51 | 3.688 |
| DS01 | 0.927 | 1.591 |
| DS02 | -0.082 | 2.105 |
| DS04 | 0.104 | 2.995 |
| DS0c | 1.01 | 0.652 |
| GP01 | 0.4 | 5.309 |
| GP02 | 1.292 | 5.465 |
| GP0c | 1.493 | 6.0 |
| NOD | 1.175 | 2.758 |
| NZO | -0.273 | 2.082 |
| PWK | 0.237 | 4.287 |
| H37Rv_KO_CtpC | 1.192 | 4.761 |
| H37Rv_KO_CtpD | 1.752 | 1.322 |
| H37Rv_KO_Rv1272 | 1.097 | 4.933 |
| H37Rv_KO_SugABC | 0.813 | 4.965 |
| H37Rv_KO_MbtN | -0.495 | 6.0 |
| Trans05 | 0.375 | 5.408 |
| macrophage_unactivated | -0.11 | -2.285 |
| IL1 | -0.73 | -2.847 |
| Rapamycin | 0.209 | -3.428 |
| Tcell | 0.635 | -1.232 |
| GMCSF | 0.09 | -2.64 |
| IFNab | -0.051 | 2.833 |
| IFNg | 1.016 | -3.643 |
| IFNg_GMCSF1 | -0.581 | -4.515 |
| Rv1432_day32 | 0.611 | 6.0 |
| Rv1565c_day32 | -0.799 | -0.554 |
| secA2_input | 0.266 | -1.904 |
| delta_Rv3594 | 0.551 | 0.231 |
| delta_Rv3717 | 0.561 | 2.636 |
| delta_Rv3811 | 0.016 | 0.754 |
| delta_Rv0954 | -1.084 | -3.748 |
| PonA1 | -0.332 | -2.389 |
| EccD1_KO | -0.855 | -2.999 |
| EspI_KO | -1.041 | -2.923 |
| PE35_KO | -0.05 | -1.552 |
| PPE68_KO | -0.054 | -2.227 |
| glycerol2 | -0.706 | -5.348 |
| lignocerate | 0.022 | -1.016 |
| oleate | -0.027 | -5.412 |
| phosphatidylcholine | 0.052 | -3.438 |
| acetate | 0.062 | -0.605 |
| glucAc | -0.079 | -0.409 |
| Rv0950ko | 0.476 | -3.95 |
| Rv1096ko | -0.597 | 0.537 |
| Rv3684ko | 0.406 | -0.517 |
| delta_otsA_trehalose | 0.623 | 0.296 |