Top 10 genes with highest correlation to Rv2001/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0820/phoT | (cc=0.5868) | info on Rv0820/phoT |
| Rv0930/pstA1 | (cc=0.5824) | info on Rv0930/pstA1 |
| Rv0928/pstS3 | (cc=0.5453) | info on Rv0928/pstS3 |
| Rv3050c/- | (cc=0.5401) | info on Rv3050c/- |
| Rv0929/pstC2 | (cc=0.5394) | info on Rv0929/pstC2 |
| Rv3831/- | (cc=0.52) | info on Rv3831/- |
| Rv1925/fadD31 | (cc=0.5168) | info on Rv1925/fadD31 |
| Rv3218/- | (cc=0.5152) | info on Rv3218/- |
| Rv3210c/- | (cc=0.5088) | info on Rv3210c/- |
| Rv0924c/mntH | (cc=0.5071) | info on Rv0924c/mntH |
Correlation of Rv2001/- with Rv0929/pstC2
Normalized LFCs for Rv2001/-:
(description and provenance of datasets)
| Rv2001/- | Rv0929/pstC2 | |
| Fe_supp_jason_reseq | 0.054 | -2.603 |
| low_pH_jason_reseq | -1.022 | 3.033 |
| NO_jason_reseq | 0.176 | -2.625 |
| B6_jason_reseq | 0.326 | 1.639 |
| MHCII_jason_reseq | 0.05 | 0.514 |
| Isoniazid02 | -0.244 | -0.281 |
| Rifampicin4 | -0.498 | -3.831 |
| Ethambutol3 | -0.505 | 1.007 |
| Meropenem3 | -0.497 | -1.942 |
| Vancomycin16 | -0.117 | -1.647 |
| Rv2680_day32 | 2.509 | 3.528 |
| H37Rv_KO_MarP | 0.182 | -3.056 |
| hypoxia_3wks | 0.0 | -4.406 |
| hypoxia_6wks | -0.739 | -0.061 |
| glycerol | 0.941 | 1.599 |
| cholesterol | 0.532 | 3.859 |
| AJ | 0.318 | 0.573 |
| Bibs02 | 1.423 | 2.832 |
| Bibs02c | 0.511 | 1.441 |
| BL6 | 0.045 | 5.842 |
| BL6a | 1.164 | 6.0 |
| BXD01 | 1.396 | 6.0 |
| BXD010 | 1.04 | 6.0 |
| BXD011 | 1.553 | 6.0 |
| BXD03 | -0.185 | 5.602 |
| BXD04 | 1.055 | 6.0 |
| BXD05 | 1.059 | 6.0 |
| BXD06 | 1.203 | 6.0 |
| BXD07 | 1.632 | 6.0 |
| BXD08 | 0.506 | 6.0 |
| BXD09 | 1.266 | 6.0 |
| CAST | 0.123 | 2.361 |
| CCcont | 0.51 | 3.417 |
| DS01 | 0.927 | -0.352 |
| DS02 | -0.082 | 0.285 |
| DS04 | 0.104 | 3.18 |
| DS0c | 1.01 | 0.762 |
| GP01 | 0.4 | 4.532 |
| GP02 | 1.292 | 6.0 |
| GP0c | 1.493 | 6.0 |
| NOD | 1.175 | 0.295 |
| NZO | -0.273 | 0.38 |
| PWK | 0.237 | 2.384 |
| H37Rv_KO_CtpC | 1.192 | 4.283 |
| H37Rv_KO_CtpD | 1.752 | 2.232 |
| H37Rv_KO_Rv1272 | 1.097 | 5.607 |
| H37Rv_KO_SugABC | 0.813 | 5.047 |
| H37Rv_KO_MbtN | -0.495 | 6.0 |
| Trans05 | 0.375 | 5.884 |
| macrophage_unactivated | -0.11 | -2.509 |
| IL1 | -0.73 | -2.358 |
| Rapamycin | 0.209 | -3.686 |
| Tcell | 0.635 | -1.922 |
| GMCSF | 0.09 | -2.698 |
| IFNab | -0.051 | 3.419 |
| IFNg | 1.016 | -4.479 |
| IFNg_GMCSF1 | -0.581 | -5.156 |
| Rv1432_day32 | 0.611 | 6.0 |
| Rv1565c_day32 | -0.799 | 0.415 |
| secA2_input | 0.266 | -3.467 |
| delta_Rv3594 | 0.551 | 1.036 |
| delta_Rv3717 | 0.561 | 3.279 |
| delta_Rv3811 | 0.016 | 1.152 |
| delta_Rv0954 | -1.084 | -3.841 |
| PonA1 | -0.332 | -2.253 |
| EccD1_KO | -0.855 | -1.533 |
| EspI_KO | -1.041 | -1.974 |
| PE35_KO | -0.05 | -0.601 |
| PPE68_KO | -0.054 | -0.765 |
| glycerol2 | -0.706 | -4.614 |
| lignocerate | 0.022 | -2.423 |
| oleate | -0.027 | -4.669 |
| phosphatidylcholine | 0.052 | -3.748 |
| acetate | 0.062 | -0.83 |
| glucAc | -0.079 | -1.023 |
| Rv0950ko | 0.476 | -4.158 |
| Rv1096ko | -0.597 | 0.344 |
| Rv3684ko | 0.406 | -0.249 |
| delta_otsA_trehalose | 0.623 | -1.89 |