Top 10 genes with highest correlation to Rv2001/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0820/phoT | (cc=0.5868) | info on Rv0820/phoT |
| Rv0930/pstA1 | (cc=0.5824) | info on Rv0930/pstA1 |
| Rv0928/pstS3 | (cc=0.5453) | info on Rv0928/pstS3 |
| Rv3050c/- | (cc=0.5401) | info on Rv3050c/- |
| Rv0929/pstC2 | (cc=0.5394) | info on Rv0929/pstC2 |
| Rv3831/- | (cc=0.52) | info on Rv3831/- |
| Rv1925/fadD31 | (cc=0.5168) | info on Rv1925/fadD31 |
| Rv3218/- | (cc=0.5152) | info on Rv3218/- |
| Rv3210c/- | (cc=0.5088) | info on Rv3210c/- |
| Rv0924c/mntH | (cc=0.5071) | info on Rv0924c/mntH |
Correlation of Rv2001/- with Rv0820/phoT
Normalized LFCs for Rv2001/-:
(description and provenance of datasets)
| Rv2001/- | Rv0820/phoT | |
| Fe_supp_jason_reseq | 0.054 | -2.636 |
| low_pH_jason_reseq | -1.022 | 1.788 |
| NO_jason_reseq | 0.176 | -3.079 |
| B6_jason_reseq | 0.326 | 0.638 |
| MHCII_jason_reseq | 0.05 | -0.194 |
| Isoniazid02 | -0.244 | -1.411 |
| Rifampicin4 | -0.498 | -5.902 |
| Ethambutol3 | -0.505 | -1.638 |
| Meropenem3 | -0.497 | -3.038 |
| Vancomycin16 | -0.117 | -3.573 |
| Rv2680_day32 | 2.509 | 4.269 |
| H37Rv_KO_MarP | 0.182 | -3.993 |
| hypoxia_3wks | 0.0 | -5.69 |
| hypoxia_6wks | -0.739 | 0.699 |
| glycerol | 0.941 | 4.839 |
| cholesterol | 0.532 | 6.0 |
| AJ | 0.318 | 2.269 |
| Bibs02 | 1.423 | 3.308 |
| Bibs02c | 0.511 | 3.603 |
| BL6 | 0.045 | 6.0 |
| BL6a | 1.164 | 6.0 |
| BXD01 | 1.396 | 6.0 |
| BXD010 | 1.04 | 6.0 |
| BXD011 | 1.553 | 6.0 |
| BXD03 | -0.185 | 6.0 |
| BXD04 | 1.055 | 6.0 |
| BXD05 | 1.059 | 6.0 |
| BXD06 | 1.203 | 6.0 |
| BXD07 | 1.632 | 6.0 |
| BXD08 | 0.506 | 6.0 |
| BXD09 | 1.266 | 6.0 |
| CAST | 0.123 | 5.082 |
| CCcont | 0.51 | 4.123 |
| DS01 | 0.927 | 2.01 |
| DS02 | -0.082 | 2.773 |
| DS04 | 0.104 | 3.114 |
| DS0c | 1.01 | 3.872 |
| GP01 | 0.4 | 5.604 |
| GP02 | 1.292 | 6.0 |
| GP0c | 1.493 | 6.0 |
| NOD | 1.175 | 2.423 |
| NZO | -0.273 | 1.412 |
| PWK | 0.237 | 3.862 |
| H37Rv_KO_CtpC | 1.192 | 5.235 |
| H37Rv_KO_CtpD | 1.752 | 3.389 |
| H37Rv_KO_Rv1272 | 1.097 | 6.0 |
| H37Rv_KO_SugABC | 0.813 | 4.259 |
| H37Rv_KO_MbtN | -0.495 | 6.0 |
| Trans05 | 0.375 | 6.0 |
| macrophage_unactivated | -0.11 | -2.885 |
| IL1 | -0.73 | -3.227 |
| Rapamycin | 0.209 | -3.643 |
| Tcell | 0.635 | -2.691 |
| GMCSF | 0.09 | -3.464 |
| IFNab | -0.051 | 2.905 |
| IFNg | 1.016 | -4.444 |
| IFNg_GMCSF1 | -0.581 | -5.411 |
| Rv1432_day32 | 0.611 | 6.0 |
| Rv1565c_day32 | -0.799 | 0.033 |
| secA2_input | 0.266 | -1.417 |
| delta_Rv3594 | 0.551 | 0.159 |
| delta_Rv3717 | 0.561 | 2.69 |
| delta_Rv3811 | 0.016 | 0.544 |
| delta_Rv0954 | -1.084 | -3.826 |
| PonA1 | -0.332 | -3.418 |
| EccD1_KO | -0.855 | -1.98 |
| EspI_KO | -1.041 | -2.085 |
| PE35_KO | -0.05 | -0.56 |
| PPE68_KO | -0.054 | -1.645 |
| glycerol2 | -0.706 | -5.208 |
| lignocerate | 0.022 | -2.53 |
| oleate | -0.027 | -3.933 |
| phosphatidylcholine | 0.052 | -3.148 |
| acetate | 0.062 | -0.667 |
| glucAc | -0.079 | -0.861 |
| Rv0950ko | 0.476 | -4.363 |
| Rv1096ko | -0.597 | 1.84 |
| Rv3684ko | 0.406 | 0.249 |
| delta_otsA_trehalose | 0.623 | -0.454 |