Top 10 genes with highest correlation to Rv1999c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0089/- | (cc=0.721) | info on Rv0089/- |
| Rv2499c/- | (cc=0.6894) | info on Rv2499c/- |
| Rv2007c/fdxA | (cc=0.6802) | info on Rv2007c/fdxA |
| Rv3354/- | (cc=0.6696) | info on Rv3354/- |
| Rv2076c/- | (cc=0.6597) | info on Rv2076c/- |
| Rv2633c/- | (cc=0.651) | info on Rv2633c/- |
| Rv2028c/- | (cc=0.645) | info on Rv2028c/- |
| Rv3059/cyp136 | (cc=0.6442) | info on Rv3059/cyp136 |
| Rv1846c/blaI | (cc=0.6335) | info on Rv1846c/blaI |
| Rv1974/- | (cc=0.6314) | info on Rv1974/- |
Correlation of Rv1999c/- with Rv2007c/fdxA
Normalized LFCs for Rv1999c/-:
(description and provenance of datasets)
| Rv1999c/- | Rv2007c/fdxA | |
| Fe_supp_jason_reseq | 0.032 | -0.204 |
| low_pH_jason_reseq | -0.609 | -1.392 |
| NO_jason_reseq | 0.239 | -0.11 |
| B6_jason_reseq | -0.061 | 1.433 |
| MHCII_jason_reseq | 0.316 | 0.95 |
| Isoniazid02 | 0.188 | 1.404 |
| Rifampicin4 | 0.628 | -0.504 |
| Ethambutol3 | 0.17 | 0.536 |
| Meropenem3 | -0.29 | 0.058 |
| Vancomycin16 | 0.032 | -0.151 |
| Rv2680_day32 | 0.398 | 0.81 |
| H37Rv_KO_MarP | -0.042 | 0.46 |
| hypoxia_3wks | -0.227 | -0.742 |
| hypoxia_6wks | -0.397 | -0.472 |
| glycerol | -0.499 | 0.009 |
| cholesterol | -0.351 | 0.168 |
| AJ | -0.097 | 0.39 |
| Bibs02 | 0.007 | -0.584 |
| Bibs02c | -0.088 | -0.608 |
| BL6 | -0.925 | -0.133 |
| BL6a | -0.676 | -1.979 |
| BXD01 | -0.679 | -0.994 |
| BXD010 | -0.928 | -2.471 |
| BXD011 | -0.795 | -0.939 |
| BXD03 | -0.578 | -1.307 |
| BXD04 | -0.7 | -1.409 |
| BXD05 | -1.079 | -0.376 |
| BXD06 | -0.89 | -0.973 |
| BXD07 | -0.664 | -1.338 |
| BXD08 | -0.867 | -1.695 |
| BXD09 | -0.907 | -1.372 |
| CAST | -0.35 | 0.507 |
| CCcont | -0.974 | -0.943 |
| DS01 | 0.053 | 0.464 |
| DS02 | 0.118 | 0.545 |
| DS04 | 0.333 | 0.275 |
| DS0c | -0.515 | 0.859 |
| GP01 | 0.218 | -2.45 |
| GP02 | -0.615 | -2.63 |
| GP0c | -0.365 | -1.015 |
| NOD | -0.202 | 0.433 |
| NZO | -0.228 | 0.585 |
| PWK | -0.359 | 0.618 |
| H37Rv_KO_CtpC | -1.177 | -0.737 |
| H37Rv_KO_CtpD | -0.724 | -0.202 |
| H37Rv_KO_Rv1272 | -0.021 | 1.003 |
| H37Rv_KO_SugABC | -0.338 | -1.786 |
| H37Rv_KO_MbtN | -0.29 | -0.852 |
| Trans05 | -0.035 | 0.514 |
| macrophage_unactivated | -0.038 | -1.042 |
| IL1 | -0.522 | -1.317 |
| Rapamycin | -0.623 | -0.46 |
| Tcell | -0.238 | -1.496 |
| GMCSF | 0.356 | 0.436 |
| IFNab | -0.78 | -0.795 |
| IFNg | -0.505 | 0.337 |
| IFNg_GMCSF1 | 0.072 | 1.603 |
| Rv1432_day32 | 0.248 | 0.0 |
| Rv1565c_day32 | 0.122 | -0.327 |
| secA2_input | -0.374 | -1.791 |
| delta_Rv3594 | -0.021 | -0.376 |
| delta_Rv3717 | 0.216 | -0.019 |
| delta_Rv3811 | 0.326 | -0.758 |
| delta_Rv0954 | -0.335 | -0.397 |
| PonA1 | -0.308 | -2.163 |
| EccD1_KO | 0.296 | 0.46 |
| EspI_KO | -0.088 | 0.522 |
| PE35_KO | 0.63 | 0.837 |
| PPE68_KO | 0.31 | 0.79 |
| glycerol2 | 0.765 | 2.254 |
| lignocerate | 0.848 | 3.177 |
| oleate | 0.119 | -0.105 |
| phosphatidylcholine | 0.899 | 2.724 |
| acetate | 0.648 | 3.607 |
| glucAc | 0.925 | 3.073 |
| Rv0950ko | 0.199 | 2.174 |
| Rv1096ko | -0.13 | 1.167 |
| Rv3684ko | 0.445 | 2.394 |
| delta_otsA_trehalose | 0.475 | 3.412 |