Top 10 genes with highest correlation to Rv1999c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0089/- | (cc=0.721) | info on Rv0089/- |
| Rv2499c/- | (cc=0.6894) | info on Rv2499c/- |
| Rv2007c/fdxA | (cc=0.6802) | info on Rv2007c/fdxA |
| Rv3354/- | (cc=0.6696) | info on Rv3354/- |
| Rv2076c/- | (cc=0.6597) | info on Rv2076c/- |
| Rv2633c/- | (cc=0.651) | info on Rv2633c/- |
| Rv2028c/- | (cc=0.645) | info on Rv2028c/- |
| Rv3059/cyp136 | (cc=0.6442) | info on Rv3059/cyp136 |
| Rv1846c/blaI | (cc=0.6335) | info on Rv1846c/blaI |
| Rv1974/- | (cc=0.6314) | info on Rv1974/- |
Correlation of Rv1999c/- with Rv1846c/blaI
Normalized LFCs for Rv1999c/-:
(description and provenance of datasets)
| Rv1999c/- | Rv1846c/blaI | |
| Fe_supp_jason_reseq | 0.032 | 1.228 |
| low_pH_jason_reseq | -0.609 | -2.418 |
| NO_jason_reseq | 0.239 | 0.189 |
| B6_jason_reseq | -0.061 | -1.843 |
| MHCII_jason_reseq | 0.316 | 0.355 |
| Isoniazid02 | 0.188 | 0.901 |
| Rifampicin4 | 0.628 | -1.267 |
| Ethambutol3 | 0.17 | -0.326 |
| Meropenem3 | -0.29 | 0.204 |
| Vancomycin16 | 0.032 | -0.796 |
| Rv2680_day32 | 0.398 | -3.093 |
| H37Rv_KO_MarP | -0.042 | 0.268 |
| hypoxia_3wks | -0.227 | 0.271 |
| hypoxia_6wks | -0.397 | -1.37 |
| glycerol | -0.499 | -1.583 |
| cholesterol | -0.351 | -1.124 |
| AJ | -0.097 | -2.04 |
| Bibs02 | 0.007 | -0.354 |
| Bibs02c | -0.088 | 1.129 |
| BL6 | -0.925 | -3.872 |
| BL6a | -0.676 | -0.525 |
| BXD01 | -0.679 | -2.917 |
| BXD010 | -0.928 | -4.379 |
| BXD011 | -0.795 | -3.02 |
| BXD03 | -0.578 | -2.664 |
| BXD04 | -0.7 | -2.849 |
| BXD05 | -1.079 | -1.847 |
| BXD06 | -0.89 | -3.663 |
| BXD07 | -0.664 | -3.87 |
| BXD08 | -0.867 | -2.336 |
| BXD09 | -0.907 | -3.237 |
| CAST | -0.35 | -2.636 |
| CCcont | -0.974 | -2.433 |
| DS01 | 0.053 | 0.14 |
| DS02 | 0.118 | 1.275 |
| DS04 | 0.333 | -0.086 |
| DS0c | -0.515 | -0.545 |
| GP01 | 0.218 | -0.877 |
| GP02 | -0.615 | -1.601 |
| GP0c | -0.365 | -1.516 |
| NOD | -0.202 | -1.726 |
| NZO | -0.228 | -1.787 |
| PWK | -0.359 | -1.758 |
| H37Rv_KO_CtpC | -1.177 | -2.732 |
| H37Rv_KO_CtpD | -0.724 | -2.466 |
| H37Rv_KO_Rv1272 | -0.021 | -1.974 |
| H37Rv_KO_SugABC | -0.338 | -1.211 |
| H37Rv_KO_MbtN | -0.29 | -0.641 |
| Trans05 | -0.035 | -2.346 |
| macrophage_unactivated | -0.038 | -0.073 |
| IL1 | -0.522 | -0.67 |
| Rapamycin | -0.623 | -0.611 |
| Tcell | -0.238 | -1.613 |
| GMCSF | 0.356 | 0.972 |
| IFNab | -0.78 | 0.653 |
| IFNg | -0.505 | -1.235 |
| IFNg_GMCSF1 | 0.072 | 2.256 |
| Rv1432_day32 | 0.248 | -0.632 |
| Rv1565c_day32 | 0.122 | 0.706 |
| secA2_input | -0.374 | -0.593 |
| delta_Rv3594 | -0.021 | 0.22 |
| delta_Rv3717 | 0.216 | 0.052 |
| delta_Rv3811 | 0.326 | 0.904 |
| delta_Rv0954 | -0.335 | 0.249 |
| PonA1 | -0.308 | 0.869 |
| EccD1_KO | 0.296 | 0.908 |
| EspI_KO | -0.088 | 0.279 |
| PE35_KO | 0.63 | -0.152 |
| PPE68_KO | 0.31 | 0.07 |
| glycerol2 | 0.765 | 1.499 |
| lignocerate | 0.848 | 0.168 |
| oleate | 0.119 | 0.196 |
| phosphatidylcholine | 0.899 | 0.0 |
| acetate | 0.648 | 0.0 |
| glucAc | 0.925 | 0.0 |
| Rv0950ko | 0.199 | 2.249 |
| Rv1096ko | -0.13 | -0.175 |
| Rv3684ko | 0.445 | 1.621 |
| delta_otsA_trehalose | 0.475 | -0.429 |