Top 10 genes with highest correlation to Rv1998c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1958c/- | (cc=0.5721) | info on Rv1958c/- |
| Rv2019/- | (cc=0.5342) | info on Rv2019/- |
| Rv1251c/- | (cc=0.512) | info on Rv1251c/- |
| Rv1289/- | (cc=0.4794) | info on Rv1289/- |
| Rv1182/papA3 | (cc=0.4685) | info on Rv1182/papA3 |
| Rv3354/- | (cc=0.4625) | info on Rv3354/- |
| Rv1135c/PPE16 | (cc=0.4579) | info on Rv1135c/PPE16 |
| Rv1290A/- | (cc=0.4519) | info on Rv1290A/- |
| Rv3208A/TB9.4 | (cc=0.4451) | info on Rv3208A/TB9.4 |
| Rv1676/- | (cc=0.4434) | info on Rv1676/- |
Correlation of Rv1998c/- with Rv2019/-
Normalized LFCs for Rv1998c/-:
(description and provenance of datasets)
| Rv1998c/- | Rv2019/- | |
| Fe_supp_jason_reseq | -0.878 | 0.44 |
| low_pH_jason_reseq | -0.621 | -0.156 |
| NO_jason_reseq | 0.197 | -0.013 |
| B6_jason_reseq | 0.042 | 0.823 |
| MHCII_jason_reseq | 0.363 | 0.456 |
| Isoniazid02 | 0.115 | 0.118 |
| Rifampicin4 | 0.926 | 0.325 |
| Ethambutol3 | 0.295 | -0.124 |
| Meropenem3 | 0.757 | 0.059 |
| Vancomycin16 | 0.31 | 0.273 |
| Rv2680_day32 | -1.836 | 0.594 |
| H37Rv_KO_MarP | -0.547 | -0.807 |
| hypoxia_3wks | -0.865 | -0.845 |
| hypoxia_6wks | -0.372 | 0.578 |
| glycerol | -0.054 | -0.512 |
| cholesterol | 0.073 | 0.244 |
| AJ | -0.619 | -0.373 |
| Bibs02 | 0.868 | -0.021 |
| Bibs02c | 0.282 | -0.635 |
| BL6 | -0.156 | -0.386 |
| BL6a | -0.079 | -0.093 |
| BXD01 | -1.381 | -0.498 |
| BXD010 | -1.107 | 0.09 |
| BXD011 | 0.127 | 0.606 |
| BXD03 | -1.535 | -0.532 |
| BXD04 | -0.803 | -0.494 |
| BXD05 | -0.94 | 0.324 |
| BXD06 | -1.075 | 0.065 |
| BXD07 | -1.572 | -0.054 |
| BXD08 | -2.073 | -0.214 |
| BXD09 | -0.878 | 0.063 |
| CAST | -0.355 | -0.584 |
| CCcont | -1.246 | 0.671 |
| DS01 | -0.71 | 0.474 |
| DS02 | -0.176 | 0.517 |
| DS04 | 0.753 | 0.822 |
| DS0c | -1.408 | -0.702 |
| GP01 | -1.958 | -0.629 |
| GP02 | -0.141 | -0.134 |
| GP0c | -0.391 | 0.009 |
| NOD | -0.838 | 0.068 |
| NZO | -0.37 | -0.046 |
| PWK | -0.303 | 0.044 |
| H37Rv_KO_CtpC | -0.606 | 0.085 |
| H37Rv_KO_CtpD | -0.449 | -0.333 |
| H37Rv_KO_Rv1272 | 1.673 | 1.223 |
| H37Rv_KO_SugABC | 0.698 | 0.041 |
| H37Rv_KO_MbtN | 0.579 | 1.693 |
| Trans05 | 1.478 | 1.087 |
| macrophage_unactivated | -1.531 | -0.83 |
| IL1 | -0.104 | -0.222 |
| Rapamycin | -0.442 | 0.187 |
| Tcell | -0.994 | 0.182 |
| GMCSF | -0.586 | 0.121 |
| IFNab | -1.324 | 0.632 |
| IFNg | -0.286 | -0.444 |
| IFNg_GMCSF1 | -1.376 | -0.468 |
| Rv1432_day32 | -1.193 | 0.055 |
| Rv1565c_day32 | 0.959 | 0.57 |
| secA2_input | -1.002 | -1.367 |
| delta_Rv3594 | 0.278 | 0.838 |
| delta_Rv3717 | 0.432 | -0.186 |
| delta_Rv3811 | 0.077 | 0.697 |
| delta_Rv0954 | -0.404 | -0.151 |
| PonA1 | -2.62 | -0.492 |
| EccD1_KO | 0.257 | 0.927 |
| EspI_KO | -0.077 | 1.03 |
| PE35_KO | 0.779 | 1.52 |
| PPE68_KO | 1.197 | 1.369 |
| glycerol2 | 0.468 | 2.299 |
| lignocerate | 1.016 | 2.763 |
| oleate | -0.286 | -0.062 |
| phosphatidylcholine | 0.468 | 2.346 |
| acetate | 0.637 | 3.72 |
| glucAc | 0.748 | 2.122 |
| Rv0950ko | -1.143 | 0.748 |
| Rv1096ko | -0.534 | -0.461 |
| Rv3684ko | -1.32 | -0.196 |
| delta_otsA_trehalose | -1.204 | 0.21 |