Top 10 genes with highest correlation to Rv1998c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1958c/- | (cc=0.5721) | info on Rv1958c/- |
| Rv2019/- | (cc=0.5342) | info on Rv2019/- |
| Rv1251c/- | (cc=0.512) | info on Rv1251c/- |
| Rv1289/- | (cc=0.4794) | info on Rv1289/- |
| Rv1182/papA3 | (cc=0.4685) | info on Rv1182/papA3 |
| Rv3354/- | (cc=0.4625) | info on Rv3354/- |
| Rv1135c/PPE16 | (cc=0.4579) | info on Rv1135c/PPE16 |
| Rv1290A/- | (cc=0.4519) | info on Rv1290A/- |
| Rv3208A/TB9.4 | (cc=0.4451) | info on Rv3208A/TB9.4 |
| Rv1676/- | (cc=0.4434) | info on Rv1676/- |
Correlation of Rv1998c/- with Rv1182/papA3
Normalized LFCs for Rv1998c/-:
(description and provenance of datasets)
| Rv1998c/- | Rv1182/papA3 | |
| Fe_supp_jason_reseq | -0.878 | 0.169 |
| low_pH_jason_reseq | -0.621 | 0.915 |
| NO_jason_reseq | 0.197 | 0.478 |
| B6_jason_reseq | 0.042 | 1.789 |
| MHCII_jason_reseq | 0.363 | 1.842 |
| Isoniazid02 | 0.115 | 0.332 |
| Rifampicin4 | 0.926 | 0.0 |
| Ethambutol3 | 0.295 | 1.685 |
| Meropenem3 | 0.757 | -0.025 |
| Vancomycin16 | 0.31 | 0.212 |
| Rv2680_day32 | -1.836 | -0.193 |
| H37Rv_KO_MarP | -0.547 | 0.574 |
| hypoxia_3wks | -0.865 | -0.69 |
| hypoxia_6wks | -0.372 | -0.422 |
| glycerol | -0.054 | -0.038 |
| cholesterol | 0.073 | 0.461 |
| AJ | -0.619 | 0.197 |
| Bibs02 | 0.868 | 0.356 |
| Bibs02c | 0.282 | -0.136 |
| BL6 | -0.156 | -1.421 |
| BL6a | -0.079 | -1.221 |
| BXD01 | -1.381 | -1.839 |
| BXD010 | -1.107 | -0.665 |
| BXD011 | 0.127 | -1.4 |
| BXD03 | -1.535 | -1.347 |
| BXD04 | -0.803 | -1.975 |
| BXD05 | -0.94 | -1.256 |
| BXD06 | -1.075 | -1.566 |
| BXD07 | -1.572 | -1.599 |
| BXD08 | -2.073 | -1.241 |
| BXD09 | -0.878 | -1.4 |
| CAST | -0.355 | 0.155 |
| CCcont | -1.246 | -1.219 |
| DS01 | -0.71 | 0.385 |
| DS02 | -0.176 | 0.271 |
| DS04 | 0.753 | 0.756 |
| DS0c | -1.408 | 0.245 |
| GP01 | -1.958 | -1.394 |
| GP02 | -0.141 | -1.579 |
| GP0c | -0.391 | -1.63 |
| NOD | -0.838 | 0.952 |
| NZO | -0.37 | 0.013 |
| PWK | -0.303 | 0.668 |
| H37Rv_KO_CtpC | -0.606 | -0.624 |
| H37Rv_KO_CtpD | -0.449 | -1.918 |
| H37Rv_KO_Rv1272 | 1.673 | -0.952 |
| H37Rv_KO_SugABC | 0.698 | -0.837 |
| H37Rv_KO_MbtN | 0.579 | 0.122 |
| Trans05 | 1.478 | 0.191 |
| macrophage_unactivated | -1.531 | -2.039 |
| IL1 | -0.104 | -0.718 |
| Rapamycin | -0.442 | -0.967 |
| Tcell | -0.994 | -2.105 |
| GMCSF | -0.586 | -1.41 |
| IFNab | -1.324 | -1.953 |
| IFNg | -0.286 | -2.793 |
| IFNg_GMCSF1 | -1.376 | -1.609 |
| Rv1432_day32 | -1.193 | -0.508 |
| Rv1565c_day32 | 0.959 | 0.088 |
| secA2_input | -1.002 | 0.0 |
| delta_Rv3594 | 0.278 | 0.502 |
| delta_Rv3717 | 0.432 | -0.268 |
| delta_Rv3811 | 0.077 | 0.827 |
| delta_Rv0954 | -0.404 | 0.24 |
| PonA1 | -2.62 | -0.067 |
| EccD1_KO | 0.257 | 0.207 |
| EspI_KO | -0.077 | 0.75 |
| PE35_KO | 0.779 | 1.21 |
| PPE68_KO | 1.197 | 1.011 |
| glycerol2 | 0.468 | 0.518 |
| lignocerate | 1.016 | 0.728 |
| oleate | -0.286 | 0.071 |
| phosphatidylcholine | 0.468 | 0.171 |
| acetate | 0.637 | -0.153 |
| glucAc | 0.748 | -0.356 |
| Rv0950ko | -1.143 | -1.152 |
| Rv1096ko | -0.534 | -0.959 |
| Rv3684ko | -1.32 | -1.624 |
| delta_otsA_trehalose | -1.204 | -0.651 |