Top 10 genes with highest correlation to Rv1998c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1958c/- | (cc=0.5721) | info on Rv1958c/- |
| Rv2019/- | (cc=0.5342) | info on Rv2019/- |
| Rv1251c/- | (cc=0.512) | info on Rv1251c/- |
| Rv1289/- | (cc=0.4794) | info on Rv1289/- |
| Rv1182/papA3 | (cc=0.4685) | info on Rv1182/papA3 |
| Rv3354/- | (cc=0.4625) | info on Rv3354/- |
| Rv1135c/PPE16 | (cc=0.4579) | info on Rv1135c/PPE16 |
| Rv1290A/- | (cc=0.4519) | info on Rv1290A/- |
| Rv3208A/TB9.4 | (cc=0.4451) | info on Rv3208A/TB9.4 |
| Rv1676/- | (cc=0.4434) | info on Rv1676/- |
Correlation of Rv1998c/- with Rv1676/-
Normalized LFCs for Rv1998c/-:
(description and provenance of datasets)
| Rv1998c/- | Rv1676/- | |
| Fe_supp_jason_reseq | -0.878 | -0.818 |
| low_pH_jason_reseq | -0.621 | 0.34 |
| NO_jason_reseq | 0.197 | 0.533 |
| B6_jason_reseq | 0.042 | -0.411 |
| MHCII_jason_reseq | 0.363 | 0.103 |
| Isoniazid02 | 0.115 | 0.268 |
| Rifampicin4 | 0.926 | 0.726 |
| Ethambutol3 | 0.295 | 0.039 |
| Meropenem3 | 0.757 | 0.803 |
| Vancomycin16 | 0.31 | 0.99 |
| Rv2680_day32 | -1.836 | -0.393 |
| H37Rv_KO_MarP | -0.547 | 1.507 |
| hypoxia_3wks | -0.865 | 0.0 |
| hypoxia_6wks | -0.372 | 0.808 |
| glycerol | -0.054 | 1.181 |
| cholesterol | 0.073 | -0.118 |
| AJ | -0.619 | 1.062 |
| Bibs02 | 0.868 | 0.138 |
| Bibs02c | 0.282 | 0.85 |
| BL6 | -0.156 | -0.138 |
| BL6a | -0.079 | 0.502 |
| BXD01 | -1.381 | -0.695 |
| BXD010 | -1.107 | -0.8 |
| BXD011 | 0.127 | -0.34 |
| BXD03 | -1.535 | -1.209 |
| BXD04 | -0.803 | -0.508 |
| BXD05 | -0.94 | -0.148 |
| BXD06 | -1.075 | -1.465 |
| BXD07 | -1.572 | -0.865 |
| BXD08 | -2.073 | -1.794 |
| BXD09 | -0.878 | -1.256 |
| CAST | -0.355 | 0.853 |
| CCcont | -1.246 | 0.285 |
| DS01 | -0.71 | 1.381 |
| DS02 | -0.176 | 2.105 |
| DS04 | 0.753 | 0.753 |
| DS0c | -1.408 | 1.425 |
| GP01 | -1.958 | -0.527 |
| GP02 | -0.141 | 0.603 |
| GP0c | -0.391 | 0.16 |
| NOD | -0.838 | -0.381 |
| NZO | -0.37 | 0.587 |
| PWK | -0.303 | -0.053 |
| H37Rv_KO_CtpC | -0.606 | 0.309 |
| H37Rv_KO_CtpD | -0.449 | 2.042 |
| H37Rv_KO_Rv1272 | 1.673 | 1.968 |
| H37Rv_KO_SugABC | 0.698 | 1.851 |
| H37Rv_KO_MbtN | 0.579 | 1.596 |
| Trans05 | 1.478 | 1.077 |
| macrophage_unactivated | -1.531 | -1.502 |
| IL1 | -0.104 | -2.966 |
| Rapamycin | -0.442 | -3.069 |
| Tcell | -0.994 | -2.704 |
| GMCSF | -0.586 | -2.64 |
| IFNab | -1.324 | -3.607 |
| IFNg | -0.286 | -3.188 |
| IFNg_GMCSF1 | -1.376 | -2.13 |
| Rv1432_day32 | -1.193 | 1.46 |
| Rv1565c_day32 | 0.959 | 0.36 |
| secA2_input | -1.002 | -0.568 |
| delta_Rv3594 | 0.278 | -0.396 |
| delta_Rv3717 | 0.432 | -0.615 |
| delta_Rv3811 | 0.077 | -1.981 |
| delta_Rv0954 | -0.404 | 0.194 |
| PonA1 | -2.62 | 0.386 |
| EccD1_KO | 0.257 | 1.168 |
| EspI_KO | -0.077 | 1.372 |
| PE35_KO | 0.779 | 1.607 |
| PPE68_KO | 1.197 | 1.302 |
| glycerol2 | 0.468 | 0.581 |
| lignocerate | 1.016 | 0.843 |
| oleate | -0.286 | -0.163 |
| phosphatidylcholine | 0.468 | 0.542 |
| acetate | 0.637 | 1.15 |
| glucAc | 0.748 | 1.052 |
| Rv0950ko | -1.143 | -1.33 |
| Rv1096ko | -0.534 | 0.075 |
| Rv3684ko | -1.32 | 0.0 |
| delta_otsA_trehalose | -1.204 | -0.232 |