Top 10 genes with highest correlation to Rv1994c/cmtR:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1633/uvrB | (cc=0.6211) | info on Rv1633/uvrB |
| Rv1020/mfd | (cc=0.5432) | info on Rv1020/mfd |
| Rv2452c/- | (cc=0.5422) | info on Rv2452c/- |
| Rv3210c/- | (cc=0.5341) | info on Rv3210c/- |
| Rv0971c/echA7 | (cc=0.5331) | info on Rv0971c/echA7 |
| Rv1638/uvrA | (cc=0.5209) | info on Rv1638/uvrA |
| Rv0844c/narL | (cc=0.5116) | info on Rv0844c/narL |
| Rv0260c/- | (cc=0.5109) | info on Rv0260c/- |
| Rv0354c/PPE7 | (cc=0.5048) | info on Rv0354c/PPE7 |
| Rv1116/- | (cc=0.5034) | info on Rv1116/- |
Correlation of Rv1994c/cmtR with Rv1116/-
Normalized LFCs for Rv1994c/cmtR:
(description and provenance of datasets)
| Rv1994c/cmtR | Rv1116/- | |
| Fe_supp_jason_reseq | 2.557 | -0.079 |
| low_pH_jason_reseq | -1.939 | 1.563 |
| NO_jason_reseq | -0.417 | -0.937 |
| B6_jason_reseq | -0.375 | -0.775 |
| MHCII_jason_reseq | 0.25 | -2.185 |
| Isoniazid02 | -0.081 | -0.202 |
| Rifampicin4 | -0.19 | -0.793 |
| Ethambutol3 | 0.306 | -0.469 |
| Meropenem3 | 0.08 | -0.329 |
| Vancomycin16 | -0.382 | -0.544 |
| Rv2680_day32 | -1.033 | -3.002 |
| H37Rv_KO_MarP | 0.285 | 0.209 |
| hypoxia_3wks | -0.953 | 0.881 |
| hypoxia_6wks | -0.95 | 0.315 |
| glycerol | 0.531 | -2.319 |
| cholesterol | 3.294 | -1.265 |
| AJ | -0.585 | -0.866 |
| Bibs02 | 1.84 | -0.507 |
| Bibs02c | 1.437 | 1.479 |
| BL6 | 0.891 | 1.089 |
| BL6a | 1.712 | 3.068 |
| BXD01 | 1.096 | 1.975 |
| BXD010 | 1.277 | 3.315 |
| BXD011 | 1.101 | 2.491 |
| BXD03 | 1.854 | 2.737 |
| BXD04 | 0.97 | 2.569 |
| BXD05 | 1.133 | 2.73 |
| BXD06 | 1.729 | 2.452 |
| BXD07 | 1.212 | 2.972 |
| BXD08 | 1.732 | 2.685 |
| BXD09 | 1.59 | 2.084 |
| CAST | -0.37 | -0.859 |
| CCcont | 2.116 | 1.588 |
| DS01 | 0.527 | -0.352 |
| DS02 | -1.925 | -2.497 |
| DS04 | 0.885 | -1.405 |
| DS0c | -1.92 | -1.425 |
| GP01 | 0.843 | 2.097 |
| GP02 | 1.97 | -0.353 |
| GP0c | 1.655 | 2.178 |
| NOD | -2.265 | -0.623 |
| NZO | -1.546 | -2.29 |
| PWK | -0.905 | -1.563 |
| H37Rv_KO_CtpC | 1.982 | 3.593 |
| H37Rv_KO_CtpD | 2.558 | 1.121 |
| H37Rv_KO_Rv1272 | 2.248 | 1.482 |
| H37Rv_KO_SugABC | 0.159 | -0.321 |
| H37Rv_KO_MbtN | 0.977 | 1.349 |
| Trans05 | 2.386 | 1.761 |
| macrophage_unactivated | 1.155 | -1.727 |
| IL1 | -0.05 | -1.216 |
| Rapamycin | -0.755 | -0.414 |
| Tcell | 0.381 | -1.606 |
| GMCSF | -0.385 | -0.38 |
| IFNab | 1.149 | -0.46 |
| IFNg | -0.714 | -1.646 |
| IFNg_GMCSF1 | 0.468 | -0.723 |
| Rv1432_day32 | 0.619 | 0.0 |
| Rv1565c_day32 | -1.447 | -0.622 |
| secA2_input | 0.396 | 0.092 |
| delta_Rv3594 | -1.519 | -2.284 |
| delta_Rv3717 | 0.2 | -0.364 |
| delta_Rv3811 | -0.593 | 0.213 |
| delta_Rv0954 | -0.47 | -1.87 |
| PonA1 | -0.957 | -3.333 |
| EccD1_KO | 0.197 | 0.51 |
| EspI_KO | 0.933 | 1.934 |
| PE35_KO | 0.925 | 0.796 |
| PPE68_KO | 0.656 | 1.523 |
| glycerol2 | 0.709 | -1.516 |
| lignocerate | 0.505 | -1.445 |
| oleate | -0.829 | -0.045 |
| phosphatidylcholine | -0.458 | -0.403 |
| acetate | 1.184 | -1.837 |
| glucAc | 1.066 | -2.853 |
| Rv0950ko | 1.007 | 1.263 |
| Rv1096ko | -0.437 | 0.989 |
| Rv3684ko | 0.576 | 0.095 |
| delta_otsA_trehalose | -0.138 | 0.483 |