Top 10 genes with highest correlation to Rv1994c/cmtR:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1633/uvrB | (cc=0.6211) | info on Rv1633/uvrB |
| Rv1020/mfd | (cc=0.5432) | info on Rv1020/mfd |
| Rv2452c/- | (cc=0.5422) | info on Rv2452c/- |
| Rv3210c/- | (cc=0.5341) | info on Rv3210c/- |
| Rv0971c/echA7 | (cc=0.5331) | info on Rv0971c/echA7 |
| Rv1638/uvrA | (cc=0.5209) | info on Rv1638/uvrA |
| Rv0844c/narL | (cc=0.5116) | info on Rv0844c/narL |
| Rv0260c/- | (cc=0.5109) | info on Rv0260c/- |
| Rv0354c/PPE7 | (cc=0.5048) | info on Rv0354c/PPE7 |
| Rv1116/- | (cc=0.5034) | info on Rv1116/- |
Correlation of Rv1994c/cmtR with Rv0260c/-
Normalized LFCs for Rv1994c/cmtR:
(description and provenance of datasets)
| Rv1994c/cmtR | Rv0260c/- | |
| Fe_supp_jason_reseq | 2.557 | 0.305 |
| low_pH_jason_reseq | -1.939 | -0.371 |
| NO_jason_reseq | -0.417 | 0.507 |
| B6_jason_reseq | -0.375 | -0.486 |
| MHCII_jason_reseq | 0.25 | -0.849 |
| Isoniazid02 | -0.081 | -0.927 |
| Rifampicin4 | -0.19 | -0.942 |
| Ethambutol3 | 0.306 | -0.103 |
| Meropenem3 | 0.08 | -0.325 |
| Vancomycin16 | -0.382 | -0.528 |
| Rv2680_day32 | -1.033 | -2.041 |
| H37Rv_KO_MarP | 0.285 | -0.066 |
| hypoxia_3wks | -0.953 | -0.187 |
| hypoxia_6wks | -0.95 | -0.758 |
| glycerol | 0.531 | 1.044 |
| cholesterol | 3.294 | 0.421 |
| AJ | -0.585 | 1.2 |
| Bibs02 | 1.84 | 1.673 |
| Bibs02c | 1.437 | 0.247 |
| BL6 | 0.891 | 1.504 |
| BL6a | 1.712 | 1.517 |
| BXD01 | 1.096 | 2.017 |
| BXD010 | 1.277 | 1.215 |
| BXD011 | 1.101 | 0.812 |
| BXD03 | 1.854 | 2.181 |
| BXD04 | 0.97 | 0.922 |
| BXD05 | 1.133 | 0.975 |
| BXD06 | 1.729 | 1.198 |
| BXD07 | 1.212 | 1.947 |
| BXD08 | 1.732 | 1.885 |
| BXD09 | 1.59 | 1.31 |
| CAST | -0.37 | 0.272 |
| CCcont | 2.116 | 2.435 |
| DS01 | 0.527 | 1.451 |
| DS02 | -1.925 | 0.764 |
| DS04 | 0.885 | 0.301 |
| DS0c | -1.92 | -0.396 |
| GP01 | 0.843 | 1.017 |
| GP02 | 1.97 | 0.409 |
| GP0c | 1.655 | 1.021 |
| NOD | -2.265 | 0.181 |
| NZO | -1.546 | 0.98 |
| PWK | -0.905 | 0.57 |
| H37Rv_KO_CtpC | 1.982 | 2.017 |
| H37Rv_KO_CtpD | 2.558 | 1.862 |
| H37Rv_KO_Rv1272 | 2.248 | 0.799 |
| H37Rv_KO_SugABC | 0.159 | 1.425 |
| H37Rv_KO_MbtN | 0.977 | 0.768 |
| Trans05 | 2.386 | 1.387 |
| macrophage_unactivated | 1.155 | 0.884 |
| IL1 | -0.05 | 0.831 |
| Rapamycin | -0.755 | 0.924 |
| Tcell | 0.381 | 1.114 |
| GMCSF | -0.385 | 0.903 |
| IFNab | 1.149 | 0.783 |
| IFNg | -0.714 | 0.914 |
| IFNg_GMCSF1 | 0.468 | 0.606 |
| Rv1432_day32 | 0.619 | 0.705 |
| Rv1565c_day32 | -1.447 | 0.834 |
| secA2_input | 0.396 | -1.299 |
| delta_Rv3594 | -1.519 | -1.618 |
| delta_Rv3717 | 0.2 | 0.355 |
| delta_Rv3811 | -0.593 | -0.198 |
| delta_Rv0954 | -0.47 | -1.654 |
| PonA1 | -0.957 | -2.48 |
| EccD1_KO | 0.197 | 0.224 |
| EspI_KO | 0.933 | 0.334 |
| PE35_KO | 0.925 | -0.54 |
| PPE68_KO | 0.656 | 0.0 |
| glycerol2 | 0.709 | 0.793 |
| lignocerate | 0.505 | 1.195 |
| oleate | -0.829 | 0.526 |
| phosphatidylcholine | -0.458 | 1.015 |
| acetate | 1.184 | 1.167 |
| glucAc | 1.066 | 1.314 |
| Rv0950ko | 1.007 | -0.202 |
| Rv1096ko | -0.437 | -0.875 |
| Rv3684ko | 0.576 | -0.57 |
| delta_otsA_trehalose | -0.138 | -0.11 |