Top 10 genes with highest correlation to Rv1989c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3638/- | (cc=0.5864) | info on Rv3638/- |
| Rv1734c/- | (cc=0.5817) | info on Rv1734c/- |
| Rv1735c/- | (cc=0.5603) | info on Rv1735c/- |
| Rv3294c/- | (cc=0.5534) | info on Rv3294c/- |
| Rv2385/mbtJ | (cc=0.5458) | info on Rv2385/mbtJ |
| Rv1467c/fadE15 | (cc=0.5429) | info on Rv1467c/fadE15 |
| Rv2917/- | (cc=0.5278) | info on Rv2917/- |
| Rv1736c/narX | (cc=0.5235) | info on Rv1736c/narX |
| Rv0089/- | (cc=0.5226) | info on Rv0089/- |
| Rv0840c/pip | (cc=0.5207) | info on Rv0840c/pip |
Correlation of Rv1989c/- with Rv2385/mbtJ
Normalized LFCs for Rv1989c/-:
(description and provenance of datasets)
| Rv1989c/- | Rv2385/mbtJ | |
| Fe_supp_jason_reseq | -0.633 | -0.638 |
| low_pH_jason_reseq | -0.243 | 0.376 |
| NO_jason_reseq | 0.446 | -0.181 |
| B6_jason_reseq | 0.514 | 0.661 |
| MHCII_jason_reseq | 0.217 | 0.998 |
| Isoniazid02 | 0.499 | -0.127 |
| Rifampicin4 | -0.915 | -0.926 |
| Ethambutol3 | 0.931 | 0.981 |
| Meropenem3 | -0.738 | -0.639 |
| Vancomycin16 | -0.26 | -0.523 |
| Rv2680_day32 | 0.615 | 0.477 |
| H37Rv_KO_MarP | 0.049 | 0.016 |
| hypoxia_3wks | -0.187 | 0.04 |
| hypoxia_6wks | -0.221 | -0.102 |
| glycerol | -1.791 | 0.351 |
| cholesterol | -0.893 | 0.456 |
| AJ | -0.034 | 0.025 |
| Bibs02 | 0.442 | 0.049 |
| Bibs02c | 0.138 | 0.132 |
| BL6 | -1.171 | -1.463 |
| BL6a | -0.36 | 0.0 |
| BXD01 | -0.451 | -0.625 |
| BXD010 | -1.432 | -0.777 |
| BXD011 | -0.947 | -0.785 |
| BXD03 | -0.586 | -0.205 |
| BXD04 | -0.24 | -0.636 |
| BXD05 | -0.529 | -0.238 |
| BXD06 | -1.085 | -0.698 |
| BXD07 | -0.764 | -0.077 |
| BXD08 | -0.912 | -0.417 |
| BXD09 | -0.975 | -0.503 |
| CAST | -0.087 | 0.744 |
| CCcont | -1.18 | -1.605 |
| DS01 | -0.05 | 0.113 |
| DS02 | 0.314 | 0.126 |
| DS04 | 0.008 | -0.153 |
| DS0c | -0.041 | 0.666 |
| GP01 | 0.022 | -0.732 |
| GP02 | 1.252 | 0.5 |
| GP0c | -0.335 | -0.612 |
| NOD | 0.221 | 0.823 |
| NZO | -0.452 | 0.0 |
| PWK | -0.121 | -0.236 |
| H37Rv_KO_CtpC | -0.824 | -0.986 |
| H37Rv_KO_CtpD | -0.613 | 0.464 |
| H37Rv_KO_Rv1272 | 0.126 | 0.11 |
| H37Rv_KO_SugABC | -0.039 | 0.027 |
| H37Rv_KO_MbtN | 0.025 | 0.044 |
| Trans05 | 0.533 | 0.464 |
| macrophage_unactivated | -0.546 | -0.751 |
| IL1 | -1.056 | 0.326 |
| Rapamycin | -1.114 | -0.399 |
| Tcell | -0.564 | -0.74 |
| GMCSF | -0.826 | 0.1 |
| IFNab | -0.602 | -0.967 |
| IFNg | 0.219 | -0.155 |
| IFNg_GMCSF1 | 0.053 | -0.06 |
| Rv1432_day32 | 0.493 | 0.087 |
| Rv1565c_day32 | 0.548 | 1.602 |
| secA2_input | -0.888 | 0.219 |
| delta_Rv3594 | 0.85 | 0.662 |
| delta_Rv3717 | 0.337 | 0.293 |
| delta_Rv3811 | 0.573 | 0.189 |
| delta_Rv0954 | 0.417 | 0.016 |
| PonA1 | 0.083 | 0.971 |
| EccD1_KO | 0.661 | -0.543 |
| EspI_KO | -0.114 | 0.174 |
| PE35_KO | 0.248 | 0.061 |
| PPE68_KO | -0.128 | -0.099 |
| glycerol2 | 0.083 | 0.088 |
| lignocerate | 0.153 | -0.532 |
| oleate | 0.349 | 0.692 |
| phosphatidylcholine | 0.218 | 0.396 |
| acetate | -0.472 | -1.009 |
| glucAc | -0.616 | -1.034 |
| Rv0950ko | 0.28 | 0.7 |
| Rv1096ko | 0.057 | 0.76 |
| Rv3684ko | -0.377 | -0.269 |
| delta_otsA_trehalose | 1.837 | 0.322 |