Top 10 genes with highest correlation to Rv1989c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3638/- | (cc=0.5864) | info on Rv3638/- |
| Rv1734c/- | (cc=0.5817) | info on Rv1734c/- |
| Rv1735c/- | (cc=0.5603) | info on Rv1735c/- |
| Rv3294c/- | (cc=0.5534) | info on Rv3294c/- |
| Rv2385/mbtJ | (cc=0.5458) | info on Rv2385/mbtJ |
| Rv1467c/fadE15 | (cc=0.5429) | info on Rv1467c/fadE15 |
| Rv2917/- | (cc=0.5278) | info on Rv2917/- |
| Rv1736c/narX | (cc=0.5235) | info on Rv1736c/narX |
| Rv0089/- | (cc=0.5226) | info on Rv0089/- |
| Rv0840c/pip | (cc=0.5207) | info on Rv0840c/pip |
Correlation of Rv1989c/- with Rv0089/-
Normalized LFCs for Rv1989c/-:
(description and provenance of datasets)
| Rv1989c/- | Rv0089/- | |
| Fe_supp_jason_reseq | -0.633 | -0.617 |
| low_pH_jason_reseq | -0.243 | -0.221 |
| NO_jason_reseq | 0.446 | 0.047 |
| B6_jason_reseq | 0.514 | 0.241 |
| MHCII_jason_reseq | 0.217 | 0.487 |
| Isoniazid02 | 0.499 | 0.877 |
| Rifampicin4 | -0.915 | -0.701 |
| Ethambutol3 | 0.931 | -0.483 |
| Meropenem3 | -0.738 | -0.564 |
| Vancomycin16 | -0.26 | 0.0 |
| Rv2680_day32 | 0.615 | 1.554 |
| H37Rv_KO_MarP | 0.049 | 1.943 |
| hypoxia_3wks | -0.187 | -0.59 |
| hypoxia_6wks | -0.221 | -0.699 |
| glycerol | -1.791 | -1.188 |
| cholesterol | -0.893 | -0.61 |
| AJ | -0.034 | 0.069 |
| Bibs02 | 0.442 | 0.098 |
| Bibs02c | 0.138 | 0.0 |
| BL6 | -1.171 | -1.724 |
| BL6a | -0.36 | -1.411 |
| BXD01 | -0.451 | -1.681 |
| BXD010 | -1.432 | -1.478 |
| BXD011 | -0.947 | -1.727 |
| BXD03 | -0.586 | -1.397 |
| BXD04 | -0.24 | -0.973 |
| BXD05 | -0.529 | -1.529 |
| BXD06 | -1.085 | -1.642 |
| BXD07 | -0.764 | -2.006 |
| BXD08 | -0.912 | -2.382 |
| BXD09 | -0.975 | -1.596 |
| CAST | -0.087 | 0.492 |
| CCcont | -1.18 | -0.977 |
| DS01 | -0.05 | -0.209 |
| DS02 | 0.314 | 0.153 |
| DS04 | 0.008 | 0.462 |
| DS0c | -0.041 | 0.308 |
| GP01 | 0.022 | 0.326 |
| GP02 | 1.252 | -1.336 |
| GP0c | -0.335 | -0.489 |
| NOD | 0.221 | 0.145 |
| NZO | -0.452 | -0.1 |
| PWK | -0.121 | 0.389 |
| H37Rv_KO_CtpC | -0.824 | -1.138 |
| H37Rv_KO_CtpD | -0.613 | -3.064 |
| H37Rv_KO_Rv1272 | 0.126 | -0.742 |
| H37Rv_KO_SugABC | -0.039 | -0.481 |
| H37Rv_KO_MbtN | 0.025 | -1.571 |
| Trans05 | 0.533 | 0.008 |
| macrophage_unactivated | -0.546 | -2.727 |
| IL1 | -1.056 | -1.246 |
| Rapamycin | -1.114 | -2.071 |
| Tcell | -0.564 | -1.3 |
| GMCSF | -0.826 | -1.848 |
| IFNab | -0.602 | -2.524 |
| IFNg | 0.219 | -1.871 |
| IFNg_GMCSF1 | 0.053 | -0.936 |
| Rv1432_day32 | 0.493 | 0.301 |
| Rv1565c_day32 | 0.548 | 0.594 |
| secA2_input | -0.888 | -1.028 |
| delta_Rv3594 | 0.85 | 0.0 |
| delta_Rv3717 | 0.337 | -0.216 |
| delta_Rv3811 | 0.573 | 0.755 |
| delta_Rv0954 | 0.417 | 0.442 |
| PonA1 | 0.083 | -0.308 |
| EccD1_KO | 0.661 | -0.118 |
| EspI_KO | -0.114 | 1.221 |
| PE35_KO | 0.248 | 0.204 |
| PPE68_KO | -0.128 | 1.497 |
| glycerol2 | 0.083 | 1.494 |
| lignocerate | 0.153 | 1.736 |
| oleate | 0.349 | -0.505 |
| phosphatidylcholine | 0.218 | 1.304 |
| acetate | -0.472 | 2.168 |
| glucAc | -0.616 | 1.508 |
| Rv0950ko | 0.28 | -0.169 |
| Rv1096ko | 0.057 | 0.983 |
| Rv3684ko | -0.377 | 1.019 |
| delta_otsA_trehalose | 1.837 | 1.304 |