Top 10 genes with highest correlation to Rv1978/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3121/cyp141 | (cc=0.5935) | info on Rv3121/cyp141 |
| Rv1871c/- | (cc=0.5423) | info on Rv1871c/- |
| Rv1980c/mpt64 | (cc=0.5044) | info on Rv1980c/mpt64 |
| Rv1790/PPE27 | (cc=0.4969) | info on Rv1790/PPE27 |
| Rv1966/mce3A | (cc=0.4956) | info on Rv1966/mce3A |
| Rv1949c/- | (cc=0.4955) | info on Rv1949c/- |
| Rv2958c/- | (cc=0.4933) | info on Rv2958c/- |
| Rv1787/PPE25 | (cc=0.4717) | info on Rv1787/PPE25 |
| Rv2339/mmpL9 | (cc=0.4629) | info on Rv2339/mmpL9 |
| Rv3020c/esxS | (cc=0.4524) | info on Rv3020c/esxS |
Correlation of Rv1978/- with Rv2958c/-
Normalized LFCs for Rv1978/-:
(description and provenance of datasets)
| Rv1978/- | Rv2958c/- | |
| Fe_supp_jason_reseq | -0.628 | 0.218 |
| low_pH_jason_reseq | -0.888 | -0.591 |
| NO_jason_reseq | 0.425 | -0.412 |
| B6_jason_reseq | -0.968 | -0.317 |
| MHCII_jason_reseq | -0.985 | 0.082 |
| Isoniazid02 | -0.211 | 0.674 |
| Rifampicin4 | 0.073 | 0.103 |
| Ethambutol3 | -0.164 | 0.818 |
| Meropenem3 | -0.417 | 0.367 |
| Vancomycin16 | 0.34 | 0.257 |
| Rv2680_day32 | 0.539 | 0.459 |
| H37Rv_KO_MarP | 0.402 | 0.464 |
| hypoxia_3wks | -0.167 | 0.016 |
| hypoxia_6wks | -0.119 | -0.495 |
| glycerol | -1.483 | -1.678 |
| cholesterol | -0.701 | -0.524 |
| AJ | 0.304 | 0.212 |
| Bibs02 | -0.221 | 0.257 |
| Bibs02c | -0.655 | 0.382 |
| BL6 | -0.337 | -0.448 |
| BL6a | -0.126 | 0.211 |
| BXD01 | -0.272 | -0.022 |
| BXD010 | 0.277 | 0.164 |
| BXD011 | 0.263 | 0.071 |
| BXD03 | -0.214 | -0.041 |
| BXD04 | -0.253 | 0.179 |
| BXD05 | 0.344 | 0.198 |
| BXD06 | 0.035 | -0.162 |
| BXD07 | 0.206 | -0.105 |
| BXD08 | -0.445 | 0.008 |
| BXD09 | -0.018 | -0.21 |
| CAST | 0.103 | 0.092 |
| CCcont | -0.409 | -0.071 |
| DS01 | -0.364 | 0.269 |
| DS02 | -0.359 | 0.263 |
| DS04 | -0.228 | 0.548 |
| DS0c | -0.512 | 0.225 |
| GP01 | 0.129 | 0.408 |
| GP02 | 0.301 | 0.959 |
| GP0c | -0.691 | -0.35 |
| NOD | 0.563 | 0.937 |
| NZO | -0.127 | 0.475 |
| PWK | 0.28 | 0.485 |
| H37Rv_KO_CtpC | -0.688 | 0.377 |
| H37Rv_KO_CtpD | 0.484 | 0.694 |
| H37Rv_KO_Rv1272 | 0.562 | 0.96 |
| H37Rv_KO_SugABC | -0.156 | 0.495 |
| H37Rv_KO_MbtN | 0.794 | 0.425 |
| Trans05 | 0.782 | 1.058 |
| macrophage_unactivated | -0.262 | 0.136 |
| IL1 | -0.359 | -0.744 |
| Rapamycin | 0.083 | -0.276 |
| Tcell | -0.254 | -0.306 |
| GMCSF | 0.681 | -0.177 |
| IFNab | 0.027 | -0.414 |
| IFNg | 0.679 | -0.179 |
| IFNg_GMCSF1 | 0.057 | 0.277 |
| Rv1432_day32 | -0.304 | 0.365 |
| Rv1565c_day32 | 0.297 | 0.303 |
| secA2_input | -0.452 | -0.524 |
| delta_Rv3594 | 0.073 | 0.366 |
| delta_Rv3717 | -0.31 | -0.198 |
| delta_Rv3811 | -0.446 | 0.26 |
| delta_Rv0954 | -0.605 | -0.059 |
| PonA1 | -0.201 | -0.108 |
| EccD1_KO | -0.086 | 0.28 |
| EspI_KO | 0.088 | 0.342 |
| PE35_KO | 0.388 | 0.586 |
| PPE68_KO | 0.499 | 0.394 |
| glycerol2 | 0.754 | 0.509 |
| lignocerate | -0.289 | 0.6 |
| oleate | 0.537 | 0.509 |
| phosphatidylcholine | -0.085 | 0.71 |
| acetate | -0.577 | 0.166 |
| glucAc | -0.695 | 0.194 |
| Rv0950ko | 0.262 | 0.066 |
| Rv1096ko | -0.232 | -0.682 |
| Rv3684ko | -0.183 | -0.465 |
| delta_otsA_trehalose | -0.119 | 0.014 |