Top 10 genes with highest correlation to Rv1978/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3121/cyp141 | (cc=0.5935) | info on Rv3121/cyp141 |
| Rv1871c/- | (cc=0.5423) | info on Rv1871c/- |
| Rv1980c/mpt64 | (cc=0.5044) | info on Rv1980c/mpt64 |
| Rv1790/PPE27 | (cc=0.4969) | info on Rv1790/PPE27 |
| Rv1966/mce3A | (cc=0.4956) | info on Rv1966/mce3A |
| Rv1949c/- | (cc=0.4955) | info on Rv1949c/- |
| Rv2958c/- | (cc=0.4933) | info on Rv2958c/- |
| Rv1787/PPE25 | (cc=0.4717) | info on Rv1787/PPE25 |
| Rv2339/mmpL9 | (cc=0.4629) | info on Rv2339/mmpL9 |
| Rv3020c/esxS | (cc=0.4524) | info on Rv3020c/esxS |
Correlation of Rv1978/- with Rv1949c/-
Normalized LFCs for Rv1978/-:
(description and provenance of datasets)
| Rv1978/- | Rv1949c/- | |
| Fe_supp_jason_reseq | -0.628 | 0.311 |
| low_pH_jason_reseq | -0.888 | -0.689 |
| NO_jason_reseq | 0.425 | 0.239 |
| B6_jason_reseq | -0.968 | -0.692 |
| MHCII_jason_reseq | -0.985 | -0.969 |
| Isoniazid02 | -0.211 | -0.113 |
| Rifampicin4 | 0.073 | -0.011 |
| Ethambutol3 | -0.164 | 0.047 |
| Meropenem3 | -0.417 | 0.629 |
| Vancomycin16 | 0.34 | -0.377 |
| Rv2680_day32 | 0.539 | 0.057 |
| H37Rv_KO_MarP | 0.402 | 0.48 |
| hypoxia_3wks | -0.167 | 0.303 |
| hypoxia_6wks | -0.119 | -0.547 |
| glycerol | -1.483 | -0.888 |
| cholesterol | -0.701 | 0.519 |
| AJ | 0.304 | -0.044 |
| Bibs02 | -0.221 | 0.258 |
| Bibs02c | -0.655 | -0.341 |
| BL6 | -0.337 | -0.195 |
| BL6a | -0.126 | -0.142 |
| BXD01 | -0.272 | 0.438 |
| BXD010 | 0.277 | -0.041 |
| BXD011 | 0.263 | 0.194 |
| BXD03 | -0.214 | 0.242 |
| BXD04 | -0.253 | 0.926 |
| BXD05 | 0.344 | 0.283 |
| BXD06 | 0.035 | 0.033 |
| BXD07 | 0.206 | 0.226 |
| BXD08 | -0.445 | 0.742 |
| BXD09 | -0.018 | 0.274 |
| CAST | 0.103 | 0.085 |
| CCcont | -0.409 | -0.573 |
| DS01 | -0.364 | 0.074 |
| DS02 | -0.359 | 0.041 |
| DS04 | -0.228 | -0.675 |
| DS0c | -0.512 | -0.402 |
| GP01 | 0.129 | 0.819 |
| GP02 | 0.301 | 0.762 |
| GP0c | -0.691 | -0.221 |
| NOD | 0.563 | -0.072 |
| NZO | -0.127 | 0.038 |
| PWK | 0.28 | -0.013 |
| H37Rv_KO_CtpC | -0.688 | 0.887 |
| H37Rv_KO_CtpD | 0.484 | 0.158 |
| H37Rv_KO_Rv1272 | 0.562 | 0.568 |
| H37Rv_KO_SugABC | -0.156 | 0.301 |
| H37Rv_KO_MbtN | 0.794 | 0.92 |
| Trans05 | 0.782 | 1.347 |
| macrophage_unactivated | -0.262 | 0.139 |
| IL1 | -0.359 | -0.792 |
| Rapamycin | 0.083 | -0.344 |
| Tcell | -0.254 | -0.15 |
| GMCSF | 0.681 | 0.364 |
| IFNab | 0.027 | -0.369 |
| IFNg | 0.679 | 0.024 |
| IFNg_GMCSF1 | 0.057 | -0.264 |
| Rv1432_day32 | -0.304 | 0.068 |
| Rv1565c_day32 | 0.297 | 0.019 |
| secA2_input | -0.452 | -0.753 |
| delta_Rv3594 | 0.073 | 0.044 |
| delta_Rv3717 | -0.31 | -0.059 |
| delta_Rv3811 | -0.446 | -0.123 |
| delta_Rv0954 | -0.605 | -0.69 |
| PonA1 | -0.201 | -0.125 |
| EccD1_KO | -0.086 | 0.158 |
| EspI_KO | 0.088 | -0.08 |
| PE35_KO | 0.388 | 0.099 |
| PPE68_KO | 0.499 | 0.067 |
| glycerol2 | 0.754 | 0.115 |
| lignocerate | -0.289 | -0.438 |
| oleate | 0.537 | 0.644 |
| phosphatidylcholine | -0.085 | 0.409 |
| acetate | -0.577 | -1.159 |
| glucAc | -0.695 | -1.522 |
| Rv0950ko | 0.262 | 0.075 |
| Rv1096ko | -0.232 | -0.995 |
| Rv3684ko | -0.183 | -0.305 |
| delta_otsA_trehalose | -0.119 | -0.338 |