Top 10 genes with highest correlation to Rv1965/yrbE3B:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3354/- | (cc=0.5638) | info on Rv3354/- |
| Rv1863c/- | (cc=0.5519) | info on Rv1863c/- |
| Rv3037c/- | (cc=0.5452) | info on Rv3037c/- |
| Rv2872/vapC43 | (cc=0.5264) | info on Rv2872/vapC43 |
| Rv3395A/- | (cc=0.5179) | info on Rv3395A/- |
| Rv1070c/echA8 | (cc=0.4994) | info on Rv1070c/echA8 |
| Rv1986/- | (cc=0.4886) | info on Rv1986/- |
| Rv3136A/- | (cc=0.4881) | info on Rv3136A/- |
| Rv1956/higA | (cc=0.4864) | info on Rv1956/higA |
| Rv2559c/- | (cc=0.4859) | info on Rv2559c/- |
Correlation of Rv1965/yrbE3B with Rv1986/-
Normalized LFCs for Rv1965/yrbE3B:
(description and provenance of datasets)
| Rv1965/yrbE3B | Rv1986/- | |
| Fe_supp_jason_reseq | -0.562 | -0.219 |
| low_pH_jason_reseq | -0.811 | -0.062 |
| NO_jason_reseq | 0.032 | 0.945 |
| B6_jason_reseq | -0.263 | 0.658 |
| MHCII_jason_reseq | 0.235 | 0.361 |
| Isoniazid02 | 2.097 | 0.163 |
| Rifampicin4 | -0.108 | 0.03 |
| Ethambutol3 | 1.24 | 1.032 |
| Meropenem3 | 2.064 | 0.323 |
| Vancomycin16 | 0.064 | 0.324 |
| Rv2680_day32 | -0.068 | -0.413 |
| H37Rv_KO_MarP | -0.452 | -0.811 |
| hypoxia_3wks | 0.223 | 0.12 |
| hypoxia_6wks | -0.712 | 0.244 |
| glycerol | -0.29 | -0.654 |
| cholesterol | -0.2 | -0.7 |
| AJ | -0.076 | -0.645 |
| Bibs02 | -0.834 | 0.143 |
| Bibs02c | 0.483 | 1.45 |
| BL6 | 0.81 | -0.416 |
| BL6a | 0.046 | 1.076 |
| BXD01 | -0.444 | -0.672 |
| BXD010 | -0.531 | -1.453 |
| BXD011 | -0.9 | -0.73 |
| BXD03 | -0.637 | -0.961 |
| BXD04 | -0.647 | -0.799 |
| BXD05 | -1.327 | -2.943 |
| BXD06 | -0.907 | -1.626 |
| BXD07 | -0.481 | -1.226 |
| BXD08 | -1.093 | -1.038 |
| BXD09 | -0.869 | -1.712 |
| CAST | -0.33 | 0.252 |
| CCcont | -0.816 | -0.873 |
| DS01 | -0.339 | -0.149 |
| DS02 | -0.383 | -0.493 |
| DS04 | -0.461 | 0.128 |
| DS0c | -0.429 | 0.129 |
| GP01 | -0.781 | -1.026 |
| GP02 | -1.295 | -1.732 |
| GP0c | 0.277 | -0.671 |
| NOD | -0.56 | 0.727 |
| NZO | -0.497 | -1.797 |
| PWK | -0.345 | 0.013 |
| H37Rv_KO_CtpC | -0.061 | -0.381 |
| H37Rv_KO_CtpD | 1.129 | -0.319 |
| H37Rv_KO_Rv1272 | 1.262 | -0.495 |
| H37Rv_KO_SugABC | -1.037 | -1.476 |
| H37Rv_KO_MbtN | -0.049 | 0.962 |
| Trans05 | 0.105 | -0.929 |
| macrophage_unactivated | -0.628 | -0.874 |
| IL1 | -0.383 | -0.483 |
| Rapamycin | -0.644 | -0.313 |
| Tcell | -0.805 | -2.092 |
| GMCSF | -1.133 | -0.269 |
| IFNab | -0.895 | 0.042 |
| IFNg | 0.0 | -0.695 |
| IFNg_GMCSF1 | -0.892 | -0.817 |
| Rv1432_day32 | 2.082 | -0.229 |
| Rv1565c_day32 | -0.177 | -0.084 |
| secA2_input | 0.556 | -0.952 |
| delta_Rv3594 | 0.0 | -0.229 |
| delta_Rv3717 | -0.297 | -0.248 |
| delta_Rv3811 | 0.054 | -0.236 |
| delta_Rv0954 | -0.239 | -0.85 |
| PonA1 | 0.121 | -1.024 |
| EccD1_KO | 1.352 | 0.559 |
| EspI_KO | 0.933 | 1.338 |
| PE35_KO | 0.545 | 0.359 |
| PPE68_KO | 0.506 | 0.579 |
| glycerol2 | 0.642 | 1.021 |
| lignocerate | 0.37 | 0.81 |
| oleate | 0.7 | 1.103 |
| phosphatidylcholine | 0.563 | 0.66 |
| acetate | 0.02 | 1.017 |
| glucAc | 0.124 | 0.59 |
| Rv0950ko | 1.224 | 0.513 |
| Rv1096ko | 1.158 | -1.062 |
| Rv3684ko | 0.18 | -1.055 |
| delta_otsA_trehalose | 0.603 | 0.575 |