Top 10 genes with highest correlation to Rv1965/yrbE3B:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3354/- | (cc=0.5638) | info on Rv3354/- |
| Rv1863c/- | (cc=0.5519) | info on Rv1863c/- |
| Rv3037c/- | (cc=0.5452) | info on Rv3037c/- |
| Rv2872/vapC43 | (cc=0.5264) | info on Rv2872/vapC43 |
| Rv3395A/- | (cc=0.5179) | info on Rv3395A/- |
| Rv1070c/echA8 | (cc=0.4994) | info on Rv1070c/echA8 |
| Rv1986/- | (cc=0.4886) | info on Rv1986/- |
| Rv3136A/- | (cc=0.4881) | info on Rv3136A/- |
| Rv1956/higA | (cc=0.4864) | info on Rv1956/higA |
| Rv2559c/- | (cc=0.4859) | info on Rv2559c/- |
Correlation of Rv1965/yrbE3B with Rv1863c/-
Normalized LFCs for Rv1965/yrbE3B:
(description and provenance of datasets)
| Rv1965/yrbE3B | Rv1863c/- | |
| Fe_supp_jason_reseq | -0.562 | -0.259 |
| low_pH_jason_reseq | -0.811 | -1.472 |
| NO_jason_reseq | 0.032 | -0.417 |
| B6_jason_reseq | -0.263 | -0.322 |
| MHCII_jason_reseq | 0.235 | 0.182 |
| Isoniazid02 | 2.097 | 0.339 |
| Rifampicin4 | -0.108 | 0.149 |
| Ethambutol3 | 1.24 | 1.726 |
| Meropenem3 | 2.064 | 1.155 |
| Vancomycin16 | 0.064 | -0.096 |
| Rv2680_day32 | -0.068 | -0.431 |
| H37Rv_KO_MarP | -0.452 | -0.025 |
| hypoxia_3wks | 0.223 | -0.048 |
| hypoxia_6wks | -0.712 | -0.079 |
| glycerol | -0.29 | 0.044 |
| cholesterol | -0.2 | -0.04 |
| AJ | -0.076 | 0.018 |
| Bibs02 | -0.834 | -0.509 |
| Bibs02c | 0.483 | 0.427 |
| BL6 | 0.81 | -0.668 |
| BL6a | 0.046 | -0.027 |
| BXD01 | -0.444 | -0.161 |
| BXD010 | -0.531 | 0.194 |
| BXD011 | -0.9 | -0.492 |
| BXD03 | -0.637 | -1.123 |
| BXD04 | -0.647 | -0.203 |
| BXD05 | -1.327 | -0.964 |
| BXD06 | -0.907 | -0.48 |
| BXD07 | -0.481 | -0.415 |
| BXD08 | -1.093 | -0.315 |
| BXD09 | -0.869 | -0.7 |
| CAST | -0.33 | 0.322 |
| CCcont | -0.816 | -0.426 |
| DS01 | -0.339 | 0.255 |
| DS02 | -0.383 | 0.035 |
| DS04 | -0.461 | -0.472 |
| DS0c | -0.429 | -0.588 |
| GP01 | -0.781 | -0.107 |
| GP02 | -1.295 | -0.758 |
| GP0c | 0.277 | -0.189 |
| NOD | -0.56 | 0.078 |
| NZO | -0.497 | 0.273 |
| PWK | -0.345 | -0.23 |
| H37Rv_KO_CtpC | -0.061 | 0.402 |
| H37Rv_KO_CtpD | 1.129 | 0.189 |
| H37Rv_KO_Rv1272 | 1.262 | 0.738 |
| H37Rv_KO_SugABC | -1.037 | 0.042 |
| H37Rv_KO_MbtN | -0.049 | -0.186 |
| Trans05 | 0.105 | 0.474 |
| macrophage_unactivated | -0.628 | -0.306 |
| IL1 | -0.383 | -0.362 |
| Rapamycin | -0.644 | -0.074 |
| Tcell | -0.805 | -0.74 |
| GMCSF | -1.133 | -0.808 |
| IFNab | -0.895 | -0.493 |
| IFNg | 0.0 | -0.422 |
| IFNg_GMCSF1 | -0.892 | -0.163 |
| Rv1432_day32 | 2.082 | 0.1 |
| Rv1565c_day32 | -0.177 | -0.804 |
| secA2_input | 0.556 | -1.23 |
| delta_Rv3594 | 0.0 | 0.17 |
| delta_Rv3717 | -0.297 | 0.303 |
| delta_Rv3811 | 0.054 | 0.147 |
| delta_Rv0954 | -0.239 | 0.375 |
| PonA1 | 0.121 | -1.064 |
| EccD1_KO | 1.352 | -0.168 |
| EspI_KO | 0.933 | 0.197 |
| PE35_KO | 0.545 | -0.289 |
| PPE68_KO | 0.506 | -0.301 |
| glycerol2 | 0.642 | 0.261 |
| lignocerate | 0.37 | 0.8 |
| oleate | 0.7 | 0.79 |
| phosphatidylcholine | 0.563 | 0.896 |
| acetate | 0.02 | 0.013 |
| glucAc | 0.124 | -0.469 |
| Rv0950ko | 1.224 | 0.808 |
| Rv1096ko | 1.158 | 0.796 |
| Rv3684ko | 0.18 | 0.167 |
| delta_otsA_trehalose | 0.603 | 1.84 |