Top 10 genes with highest correlation to Rv1965/yrbE3B:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3354/- | (cc=0.5638) | info on Rv3354/- |
| Rv1863c/- | (cc=0.5519) | info on Rv1863c/- |
| Rv3037c/- | (cc=0.5452) | info on Rv3037c/- |
| Rv2872/vapC43 | (cc=0.5264) | info on Rv2872/vapC43 |
| Rv3395A/- | (cc=0.5179) | info on Rv3395A/- |
| Rv1070c/echA8 | (cc=0.4994) | info on Rv1070c/echA8 |
| Rv1986/- | (cc=0.4886) | info on Rv1986/- |
| Rv3136A/- | (cc=0.4881) | info on Rv3136A/- |
| Rv1956/higA | (cc=0.4864) | info on Rv1956/higA |
| Rv2559c/- | (cc=0.4859) | info on Rv2559c/- |
Correlation of Rv1965/yrbE3B with Rv3354/-
Normalized LFCs for Rv1965/yrbE3B:
(description and provenance of datasets)
| Rv1965/yrbE3B | Rv3354/- | |
| Fe_supp_jason_reseq | -0.562 | -1.138 |
| low_pH_jason_reseq | -0.811 | -0.381 |
| NO_jason_reseq | 0.032 | -0.793 |
| B6_jason_reseq | -0.263 | 0.985 |
| MHCII_jason_reseq | 0.235 | 1.019 |
| Isoniazid02 | 2.097 | 1.043 |
| Rifampicin4 | -0.108 | 0.125 |
| Ethambutol3 | 1.24 | 0.398 |
| Meropenem3 | 2.064 | 1.179 |
| Vancomycin16 | 0.064 | 0.162 |
| Rv2680_day32 | -0.068 | 0.659 |
| H37Rv_KO_MarP | -0.452 | 0.422 |
| hypoxia_3wks | 0.223 | -0.347 |
| hypoxia_6wks | -0.712 | -0.595 |
| glycerol | -0.29 | 0.674 |
| cholesterol | -0.2 | 0.892 |
| AJ | -0.076 | -0.171 |
| Bibs02 | -0.834 | -0.029 |
| Bibs02c | 0.483 | 0.596 |
| BL6 | 0.81 | -0.912 |
| BL6a | 0.046 | -0.067 |
| BXD01 | -0.444 | -1.687 |
| BXD010 | -0.531 | -1.434 |
| BXD011 | -0.9 | -2.812 |
| BXD03 | -0.637 | -2.487 |
| BXD04 | -0.647 | -1.729 |
| BXD05 | -1.327 | -1.146 |
| BXD06 | -0.907 | -1.932 |
| BXD07 | -0.481 | -2.262 |
| BXD08 | -1.093 | -1.667 |
| BXD09 | -0.869 | -2.542 |
| CAST | -0.33 | 0.097 |
| CCcont | -0.816 | -1.82 |
| DS01 | -0.339 | -0.077 |
| DS02 | -0.383 | 0.269 |
| DS04 | -0.461 | 0.395 |
| DS0c | -0.429 | -0.597 |
| GP01 | -0.781 | -1.486 |
| GP02 | -1.295 | -0.295 |
| GP0c | 0.277 | -0.754 |
| NOD | -0.56 | -0.169 |
| NZO | -0.497 | 0.127 |
| PWK | -0.345 | 0.367 |
| H37Rv_KO_CtpC | -0.061 | -0.788 |
| H37Rv_KO_CtpD | 1.129 | -1.146 |
| H37Rv_KO_Rv1272 | 1.262 | -0.927 |
| H37Rv_KO_SugABC | -1.037 | -0.855 |
| H37Rv_KO_MbtN | -0.049 | -1.624 |
| Trans05 | 0.105 | -0.244 |
| macrophage_unactivated | -0.628 | -1.654 |
| IL1 | -0.383 | -1.649 |
| Rapamycin | -0.644 | -1.034 |
| Tcell | -0.805 | -1.473 |
| GMCSF | -1.133 | -2.118 |
| IFNab | -0.895 | -2.056 |
| IFNg | 0.0 | -0.949 |
| IFNg_GMCSF1 | -0.892 | -0.641 |
| Rv1432_day32 | 2.082 | 0.3 |
| Rv1565c_day32 | -0.177 | 0.635 |
| secA2_input | 0.556 | 0.645 |
| delta_Rv3594 | 0.0 | -0.395 |
| delta_Rv3717 | -0.297 | -0.21 |
| delta_Rv3811 | 0.054 | 0.592 |
| delta_Rv0954 | -0.239 | 0.58 |
| PonA1 | 0.121 | -0.802 |
| EccD1_KO | 1.352 | 1.217 |
| EspI_KO | 0.933 | 1.201 |
| PE35_KO | 0.545 | 0.204 |
| PPE68_KO | 0.506 | 1.254 |
| glycerol2 | 0.642 | 1.595 |
| lignocerate | 0.37 | 1.672 |
| oleate | 0.7 | 0.822 |
| phosphatidylcholine | 0.563 | 1.291 |
| acetate | 0.02 | 1.047 |
| glucAc | 0.124 | 1.449 |
| Rv0950ko | 1.224 | 0.365 |
| Rv1096ko | 1.158 | 0.268 |
| Rv3684ko | 0.18 | 0.933 |
| delta_otsA_trehalose | 0.603 | 0.808 |