Top 10 genes with highest correlation to Rv1956/higA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2323c/- | (cc=0.6395) | info on Rv2323c/- |
| Rv3395c/- | (cc=0.6383) | info on Rv3395c/- |
| Rv2633c/- | (cc=0.6271) | info on Rv2633c/- |
| Rv1957/- | (cc=0.5998) | info on Rv1957/- |
| Rv2499c/- | (cc=0.5954) | info on Rv2499c/- |
| Rv0228/- | (cc=0.5931) | info on Rv0228/- |
| Rv0089/- | (cc=0.5882) | info on Rv0089/- |
| Rv2014/- | (cc=0.582) | info on Rv2014/- |
| Rv2506/- | (cc=0.5805) | info on Rv2506/- |
| Rv2657c/- | (cc=0.5774) | info on Rv2657c/- |
Correlation of Rv1956/higA with Rv3395c/-
Normalized LFCs for Rv1956/higA:
(description and provenance of datasets)
| Rv1956/higA | Rv3395c/- | |
| Fe_supp_jason_reseq | -0.742 | 0.38 |
| low_pH_jason_reseq | 1.464 | 0.142 |
| NO_jason_reseq | 2.875 | 1.496 |
| B6_jason_reseq | 0.376 | 2.279 |
| MHCII_jason_reseq | -0.581 | 2.468 |
| Isoniazid02 | 2.526 | 2.949 |
| Rifampicin4 | 1.985 | 1.776 |
| Ethambutol3 | 0.595 | 2.824 |
| Meropenem3 | 2.692 | 0.666 |
| Vancomycin16 | 0.202 | 0.83 |
| Rv2680_day32 | -0.038 | -0.131 |
| H37Rv_KO_MarP | -0.137 | 0.207 |
| hypoxia_3wks | -1.531 | -1.463 |
| hypoxia_6wks | -1.115 | -1.685 |
| glycerol | -0.778 | 1.328 |
| cholesterol | -1.263 | -0.104 |
| AJ | -0.272 | 0.723 |
| Bibs02 | -1.34 | -1.807 |
| Bibs02c | -1.155 | -0.13 |
| BL6 | -0.652 | -1.264 |
| BL6a | -1.72 | -0.217 |
| BXD01 | -1.387 | -1.377 |
| BXD010 | -1.225 | -1.699 |
| BXD011 | -1.202 | -1.44 |
| BXD03 | -2.879 | -2.616 |
| BXD04 | -0.425 | -1.368 |
| BXD05 | -1.144 | -1.745 |
| BXD06 | -1.391 | -2.2 |
| BXD07 | -1.324 | -3.021 |
| BXD08 | -2.556 | 1.085 |
| BXD09 | -1.676 | -2.15 |
| CAST | -0.302 | 0.02 |
| CCcont | -1.021 | -0.876 |
| DS01 | -0.778 | -0.303 |
| DS02 | -0.458 | 0.214 |
| DS04 | -1.098 | 0.0 |
| DS0c | -0.784 | 0.231 |
| GP01 | -0.015 | -1.669 |
| GP02 | -2.073 | -1.61 |
| GP0c | -1.835 | -0.931 |
| NOD | -0.295 | -0.971 |
| NZO | -0.152 | -0.218 |
| PWK | -0.374 | 0.871 |
| H37Rv_KO_CtpC | -0.599 | -3.435 |
| H37Rv_KO_CtpD | -1.943 | -2.598 |
| H37Rv_KO_Rv1272 | -0.955 | 1.022 |
| H37Rv_KO_SugABC | -1.526 | -1.973 |
| H37Rv_KO_MbtN | 0.156 | -1.836 |
| Trans05 | -1.391 | -0.045 |
| macrophage_unactivated | -2.557 | -3.857 |
| IL1 | -2.933 | -4.405 |
| Rapamycin | -3.339 | -3.069 |
| Tcell | -0.899 | -2.255 |
| GMCSF | -2.448 | -2.64 |
| IFNab | -3.997 | -0.553 |
| IFNg | -2.189 | -1.849 |
| IFNg_GMCSF1 | -1.939 | -1.524 |
| Rv1432_day32 | 1.446 | -0.142 |
| Rv1565c_day32 | -1.537 | -2.088 |
| secA2_input | 0.194 | 1.108 |
| delta_Rv3594 | 0.419 | 2.877 |
| delta_Rv3717 | 1.263 | 3.361 |
| delta_Rv3811 | 0.983 | 1.988 |
| delta_Rv0954 | -0.239 | 2.113 |
| PonA1 | -0.254 | 2.765 |
| EccD1_KO | -0.257 | -0.296 |
| EspI_KO | -0.339 | -1.335 |
| PE35_KO | -0.134 | -1.508 |
| PPE68_KO | -0.301 | -1.129 |
| glycerol2 | 1.035 | 3.254 |
| lignocerate | -0.513 | 3.841 |
| oleate | -1.365 | 0.0 |
| phosphatidylcholine | -0.374 | 3.408 |
| acetate | 1.142 | 5.243 |
| glucAc | 1.641 | 3.947 |
| Rv0950ko | -0.561 | -0.344 |
| Rv1096ko | -0.383 | 0.268 |
| Rv3684ko | 0.36 | 0.4 |
| delta_otsA_trehalose | -0.05 | -0.408 |