Top 10 genes with highest correlation to Rv1956/higA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2323c/- | (cc=0.6395) | info on Rv2323c/- |
| Rv3395c/- | (cc=0.6383) | info on Rv3395c/- |
| Rv2633c/- | (cc=0.6271) | info on Rv2633c/- |
| Rv1957/- | (cc=0.5998) | info on Rv1957/- |
| Rv2499c/- | (cc=0.5954) | info on Rv2499c/- |
| Rv0228/- | (cc=0.5931) | info on Rv0228/- |
| Rv0089/- | (cc=0.5882) | info on Rv0089/- |
| Rv2014/- | (cc=0.582) | info on Rv2014/- |
| Rv2506/- | (cc=0.5805) | info on Rv2506/- |
| Rv2657c/- | (cc=0.5774) | info on Rv2657c/- |
Correlation of Rv1956/higA with Rv0228/-
Normalized LFCs for Rv1956/higA:
(description and provenance of datasets)
| Rv1956/higA | Rv0228/- | |
| Fe_supp_jason_reseq | -0.742 | 1.07 |
| low_pH_jason_reseq | 1.464 | 0.0 |
| NO_jason_reseq | 2.875 | 0.0 |
| B6_jason_reseq | 0.376 | 1.759 |
| MHCII_jason_reseq | -0.581 | 0.37 |
| Isoniazid02 | 2.526 | -0.167 |
| Rifampicin4 | 1.985 | 0.558 |
| Ethambutol3 | 0.595 | -0.14 |
| Meropenem3 | 2.692 | 0.128 |
| Vancomycin16 | 0.202 | 0.796 |
| Rv2680_day32 | -0.038 | 0.0 |
| H37Rv_KO_MarP | -0.137 | -0.684 |
| hypoxia_3wks | -1.531 | 0.678 |
| hypoxia_6wks | -1.115 | -0.626 |
| glycerol | -0.778 | 0.585 |
| cholesterol | -1.263 | 0.915 |
| AJ | -0.272 | 0.05 |
| Bibs02 | -1.34 | 0.56 |
| Bibs02c | -1.155 | -1.66 |
| BL6 | -0.652 | -2.023 |
| BL6a | -1.72 | -2.66 |
| BXD01 | -1.387 | -2.107 |
| BXD010 | -1.225 | -2.072 |
| BXD011 | -1.202 | -2.06 |
| BXD03 | -2.879 | -2.187 |
| BXD04 | -0.425 | -2.0 |
| BXD05 | -1.144 | -2.177 |
| BXD06 | -1.391 | -2.159 |
| BXD07 | -1.324 | -2.24 |
| BXD08 | -2.556 | -2.151 |
| BXD09 | -1.676 | -2.273 |
| CAST | -0.302 | -0.389 |
| CCcont | -1.021 | -2.131 |
| DS01 | -0.778 | -0.727 |
| DS02 | -0.458 | -1.942 |
| DS04 | -1.098 | 0.779 |
| DS0c | -0.784 | -1.431 |
| GP01 | -0.015 | -1.597 |
| GP02 | -2.073 | -1.346 |
| GP0c | -1.835 | -2.103 |
| NOD | -0.295 | -0.83 |
| NZO | -0.152 | -0.285 |
| PWK | -0.374 | 0.168 |
| H37Rv_KO_CtpC | -0.599 | -2.628 |
| H37Rv_KO_CtpD | -1.943 | -1.922 |
| H37Rv_KO_Rv1272 | -0.955 | -2.281 |
| H37Rv_KO_SugABC | -1.526 | -1.503 |
| H37Rv_KO_MbtN | 0.156 | -1.667 |
| Trans05 | -1.391 | -1.983 |
| macrophage_unactivated | -2.557 | -2.923 |
| IL1 | -2.933 | -2.747 |
| Rapamycin | -3.339 | -2.842 |
| Tcell | -0.899 | -3.017 |
| GMCSF | -2.448 | -2.445 |
| IFNab | -3.997 | -2.799 |
| IFNg | -2.189 | -2.475 |
| IFNg_GMCSF1 | -1.939 | -1.386 |
| Rv1432_day32 | 1.446 | 0.0 |
| Rv1565c_day32 | -1.537 | 0.0 |
| secA2_input | 0.194 | 1.565 |
| delta_Rv3594 | 0.419 | 0.402 |
| delta_Rv3717 | 1.263 | 0.0 |
| delta_Rv3811 | 0.983 | 0.205 |
| delta_Rv0954 | -0.239 | 0.0 |
| PonA1 | -0.254 | 0.0 |
| EccD1_KO | -0.257 | -0.865 |
| EspI_KO | -0.339 | -0.359 |
| PE35_KO | -0.134 | -0.368 |
| PPE68_KO | -0.301 | -0.841 |
| glycerol2 | 1.035 | 0.0 |
| lignocerate | -0.513 | 0.591 |
| oleate | -1.365 | 0.0 |
| phosphatidylcholine | -0.374 | 0.193 |
| acetate | 1.142 | 0.0 |
| glucAc | 1.641 | 0.0 |
| Rv0950ko | -0.561 | 0.793 |
| Rv1096ko | -0.383 | 1.143 |
| Rv3684ko | 0.36 | 0.452 |
| delta_otsA_trehalose | -0.05 | 0.0 |