Top 10 genes with highest correlation to Rv1956/higA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2323c/- | (cc=0.6395) | info on Rv2323c/- |
| Rv3395c/- | (cc=0.6383) | info on Rv3395c/- |
| Rv2633c/- | (cc=0.6271) | info on Rv2633c/- |
| Rv1957/- | (cc=0.5998) | info on Rv1957/- |
| Rv2499c/- | (cc=0.5954) | info on Rv2499c/- |
| Rv0228/- | (cc=0.5931) | info on Rv0228/- |
| Rv0089/- | (cc=0.5882) | info on Rv0089/- |
| Rv2014/- | (cc=0.582) | info on Rv2014/- |
| Rv2506/- | (cc=0.5805) | info on Rv2506/- |
| Rv2657c/- | (cc=0.5774) | info on Rv2657c/- |
Correlation of Rv1956/higA with Rv0089/-
Normalized LFCs for Rv1956/higA:
(description and provenance of datasets)
| Rv1956/higA | Rv0089/- | |
| Fe_supp_jason_reseq | -0.742 | -0.617 |
| low_pH_jason_reseq | 1.464 | -0.221 |
| NO_jason_reseq | 2.875 | 0.047 |
| B6_jason_reseq | 0.376 | 0.241 |
| MHCII_jason_reseq | -0.581 | 0.487 |
| Isoniazid02 | 2.526 | 0.877 |
| Rifampicin4 | 1.985 | -0.701 |
| Ethambutol3 | 0.595 | -0.483 |
| Meropenem3 | 2.692 | -0.564 |
| Vancomycin16 | 0.202 | 0.0 |
| Rv2680_day32 | -0.038 | 1.554 |
| H37Rv_KO_MarP | -0.137 | 1.943 |
| hypoxia_3wks | -1.531 | -0.59 |
| hypoxia_6wks | -1.115 | -0.699 |
| glycerol | -0.778 | -1.188 |
| cholesterol | -1.263 | -0.61 |
| AJ | -0.272 | 0.069 |
| Bibs02 | -1.34 | 0.098 |
| Bibs02c | -1.155 | 0.0 |
| BL6 | -0.652 | -1.724 |
| BL6a | -1.72 | -1.411 |
| BXD01 | -1.387 | -1.681 |
| BXD010 | -1.225 | -1.478 |
| BXD011 | -1.202 | -1.727 |
| BXD03 | -2.879 | -1.397 |
| BXD04 | -0.425 | -0.973 |
| BXD05 | -1.144 | -1.529 |
| BXD06 | -1.391 | -1.642 |
| BXD07 | -1.324 | -2.006 |
| BXD08 | -2.556 | -2.382 |
| BXD09 | -1.676 | -1.596 |
| CAST | -0.302 | 0.492 |
| CCcont | -1.021 | -0.977 |
| DS01 | -0.778 | -0.209 |
| DS02 | -0.458 | 0.153 |
| DS04 | -1.098 | 0.462 |
| DS0c | -0.784 | 0.308 |
| GP01 | -0.015 | 0.326 |
| GP02 | -2.073 | -1.336 |
| GP0c | -1.835 | -0.489 |
| NOD | -0.295 | 0.145 |
| NZO | -0.152 | -0.1 |
| PWK | -0.374 | 0.389 |
| H37Rv_KO_CtpC | -0.599 | -1.138 |
| H37Rv_KO_CtpD | -1.943 | -3.064 |
| H37Rv_KO_Rv1272 | -0.955 | -0.742 |
| H37Rv_KO_SugABC | -1.526 | -0.481 |
| H37Rv_KO_MbtN | 0.156 | -1.571 |
| Trans05 | -1.391 | 0.008 |
| macrophage_unactivated | -2.557 | -2.727 |
| IL1 | -2.933 | -1.246 |
| Rapamycin | -3.339 | -2.071 |
| Tcell | -0.899 | -1.3 |
| GMCSF | -2.448 | -1.848 |
| IFNab | -3.997 | -2.524 |
| IFNg | -2.189 | -1.871 |
| IFNg_GMCSF1 | -1.939 | -0.936 |
| Rv1432_day32 | 1.446 | 0.301 |
| Rv1565c_day32 | -1.537 | 0.594 |
| secA2_input | 0.194 | -1.028 |
| delta_Rv3594 | 0.419 | 0.0 |
| delta_Rv3717 | 1.263 | -0.216 |
| delta_Rv3811 | 0.983 | 0.755 |
| delta_Rv0954 | -0.239 | 0.442 |
| PonA1 | -0.254 | -0.308 |
| EccD1_KO | -0.257 | -0.118 |
| EspI_KO | -0.339 | 1.221 |
| PE35_KO | -0.134 | 0.204 |
| PPE68_KO | -0.301 | 1.497 |
| glycerol2 | 1.035 | 1.494 |
| lignocerate | -0.513 | 1.736 |
| oleate | -1.365 | -0.505 |
| phosphatidylcholine | -0.374 | 1.304 |
| acetate | 1.142 | 2.168 |
| glucAc | 1.641 | 1.508 |
| Rv0950ko | -0.561 | -0.169 |
| Rv1096ko | -0.383 | 0.983 |
| Rv3684ko | 0.36 | 1.019 |
| delta_otsA_trehalose | -0.05 | 1.304 |