TnSeqCorr

Top 10 genes with highest correlation to Rv1939/-:

update plotcorrelationlink to info on gene
Rv1123c/bpoB (cc=0.5179) info on Rv1123c/bpoB
Rv2383c/mbtB (cc=0.4955) info on Rv2383c/mbtB
Rv1064c/lpqV (cc=0.4927) info on Rv1064c/lpqV
Rv3074/- (cc=0.4927) info on Rv3074/-
Rv2297/- (cc=0.4853) info on Rv2297/-
Rv3069/- (cc=0.4849) info on Rv3069/-
Rv2980/- (cc=0.4741) info on Rv2980/-
Rv2631/- (cc=0.4731) info on Rv2631/-
Rv2250A/- (cc=0.4726) info on Rv2250A/-
Rv2604c/snoP (cc=0.467) info on Rv2604c/snoP

Correlation of Rv1939/- with Rv3069/-

Normalized LFCs for Rv1939/-:
(description and provenance of datasets)
Rv1939/-Rv3069/-
Fe_supp_jason_reseq

-1.937

-1.525

low_pH_jason_reseq

1.032

1.111

NO_jason_reseq

0.383

1.297

B6_jason_reseq

-0.487

0.619

MHCII_jason_reseq

-0.671

1.495

Isoniazid02

1.014

-1.008

Rifampicin4

1.097

-0.252

Ethambutol3

0.223

-0.755

Meropenem3

1.052

-0.182

Vancomycin16

-0.106

-0.621

Rv2680_day32

1.99

-0.51

H37Rv_KO_MarP

-0.107

0.192

hypoxia_3wks

-0.459

-0.072

hypoxia_6wks

-1.244

0.177

glycerol

-1.309

0.285

cholesterol

-0.218

-0.383

AJ

0.099

0.419

Bibs02

-2.906

0.0

Bibs02c

-1.161

0.13

BL6

-3.238

-0.323

BL6a

-1.35

-0.181

BXD01

-0.888

-0.851

BXD010

-3.071

-1.639

BXD011

-1.418

-0.678

BXD03

-2.669

-1.268

BXD04

-1.917

-1.815

BXD05

-0.85

-1.323

BXD06

-2.122

-0.494

BXD07

-2.442

-0.737

BXD08

-3.189

-1.247

BXD09

-2.695

-1.018

CAST

0.232

0.073

CCcont

-3.716

-1.539

DS01

-1.571

-0.01

DS02

-0.739

0.2

DS04

-1.528

0.129

DS0c

0.643

0.416

GP01

-2.556

1.214

GP02

-2.154

1.65

GP0c

-2.727

0.68

NOD

-1.115

-0.76

NZO

0.468

0.036

PWK

0.86

0.063

H37Rv_KO_CtpC

-0.901

-0.248

H37Rv_KO_CtpD

-0.298

-2.98

H37Rv_KO_Rv1272

-0.68

-0.39

H37Rv_KO_SugABC

-0.17

-1.097

H37Rv_KO_MbtN

0.312

-1.025

Trans05

0.183

0.152

macrophage_unactivated

2.781

1.297

IL1

0.0

1.536

Rapamycin

-0.491

0.865

Tcell

3.617

1.87

GMCSF

0.729

0.449

IFNab

-1.333

0.729

IFNg

0.567

0.171

IFNg_GMCSF1

1.423

2.262

Rv1432_day32

0.087

0.249

Rv1565c_day32

1.309

1.652

secA2_input

2.408

-1.565

delta_Rv3594

-2.533

-0.968

delta_Rv3717

-0.881

-0.396

delta_Rv3811

-0.912

0.079

delta_Rv0954

-1.828

0.738

PonA1

-2.246

0.299

EccD1_KO

2.973

1.799

EspI_KO

3.254

1.517

PE35_KO

1.881

2.252

PPE68_KO

3.257

1.987

glycerol2

-3.357

0.025

lignocerate

-2.175

-0.565

oleate

-1.26

0.496

phosphatidylcholine

-1.613

0.013

acetate

-1.81

-1.275

glucAc

-3.434

-1.298

Rv0950ko

-0.823

-0.274

Rv1096ko

1.288

0.872

Rv3684ko

-1.877

-1.618

delta_otsA_trehalose

0.066

-0.087