Top 10 genes with highest correlation to Rv1939/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1123c/bpoB | (cc=0.5179) | info on Rv1123c/bpoB |
| Rv2383c/mbtB | (cc=0.4955) | info on Rv2383c/mbtB |
| Rv1064c/lpqV | (cc=0.4927) | info on Rv1064c/lpqV |
| Rv3074/- | (cc=0.4927) | info on Rv3074/- |
| Rv2297/- | (cc=0.4853) | info on Rv2297/- |
| Rv3069/- | (cc=0.4849) | info on Rv3069/- |
| Rv2980/- | (cc=0.4741) | info on Rv2980/- |
| Rv2631/- | (cc=0.4731) | info on Rv2631/- |
| Rv2250A/- | (cc=0.4726) | info on Rv2250A/- |
| Rv2604c/snoP | (cc=0.467) | info on Rv2604c/snoP |
Correlation of Rv1939/- with Rv2631/-
Normalized LFCs for Rv1939/-:
(description and provenance of datasets)
| Rv1939/- | Rv2631/- | |
| Fe_supp_jason_reseq | -1.937 | -0.099 |
| low_pH_jason_reseq | 1.032 | 1.081 |
| NO_jason_reseq | 0.383 | 0.53 |
| B6_jason_reseq | -0.487 | -0.143 |
| MHCII_jason_reseq | -0.671 | 0.941 |
| Isoniazid02 | 1.014 | -0.016 |
| Rifampicin4 | 1.097 | 0.433 |
| Ethambutol3 | 0.223 | -0.066 |
| Meropenem3 | 1.052 | -0.202 |
| Vancomycin16 | -0.106 | 0.374 |
| Rv2680_day32 | 1.99 | 0.633 |
| H37Rv_KO_MarP | -0.107 | 0.454 |
| hypoxia_3wks | -0.459 | -0.347 |
| hypoxia_6wks | -1.244 | -0.297 |
| glycerol | -1.309 | -0.192 |
| cholesterol | -0.218 | -0.02 |
| AJ | 0.099 | -0.086 |
| Bibs02 | -2.906 | -0.424 |
| Bibs02c | -1.161 | -0.427 |
| BL6 | -3.238 | -0.555 |
| BL6a | -1.35 | -0.659 |
| BXD01 | -0.888 | -0.662 |
| BXD010 | -3.071 | -0.193 |
| BXD011 | -1.418 | -0.464 |
| BXD03 | -2.669 | -0.307 |
| BXD04 | -1.917 | -0.629 |
| BXD05 | -0.85 | -0.168 |
| BXD06 | -2.122 | -0.521 |
| BXD07 | -2.442 | -0.418 |
| BXD08 | -3.189 | -0.736 |
| BXD09 | -2.695 | -0.756 |
| CAST | 0.232 | 0.01 |
| CCcont | -3.716 | -0.861 |
| DS01 | -1.571 | 0.376 |
| DS02 | -0.739 | 0.03 |
| DS04 | -1.528 | 0.086 |
| DS0c | 0.643 | 0.134 |
| GP01 | -2.556 | -1.217 |
| GP02 | -2.154 | -0.399 |
| GP0c | -2.727 | -1.008 |
| NOD | -1.115 | 0.501 |
| NZO | 0.468 | -0.019 |
| PWK | 0.86 | -0.5 |
| H37Rv_KO_CtpC | -0.901 | -1.291 |
| H37Rv_KO_CtpD | -0.298 | 0.206 |
| H37Rv_KO_Rv1272 | -0.68 | 0.219 |
| H37Rv_KO_SugABC | -0.17 | -0.796 |
| H37Rv_KO_MbtN | 0.312 | -1.089 |
| Trans05 | 0.183 | -0.111 |
| macrophage_unactivated | 2.781 | 0.12 |
| IL1 | 0.0 | -0.448 |
| Rapamycin | -0.491 | -0.031 |
| Tcell | 3.617 | -0.775 |
| GMCSF | 0.729 | 0.05 |
| IFNab | -1.333 | -0.36 |
| IFNg | 0.567 | -0.347 |
| IFNg_GMCSF1 | 1.423 | 0.031 |
| Rv1432_day32 | 0.087 | 0.523 |
| Rv1565c_day32 | 1.309 | 0.035 |
| secA2_input | 2.408 | 0.271 |
| delta_Rv3594 | -2.533 | -0.655 |
| delta_Rv3717 | -0.881 | -0.208 |
| delta_Rv3811 | -0.912 | 0.0 |
| delta_Rv0954 | -1.828 | -0.827 |
| PonA1 | -2.246 | -1.618 |
| EccD1_KO | 2.973 | 0.73 |
| EspI_KO | 3.254 | 0.368 |
| PE35_KO | 1.881 | 0.869 |
| PPE68_KO | 3.257 | 0.586 |
| glycerol2 | -3.357 | 0.046 |
| lignocerate | -2.175 | 0.488 |
| oleate | -1.26 | -0.285 |
| phosphatidylcholine | -1.613 | 0.405 |
| acetate | -1.81 | -0.271 |
| glucAc | -3.434 | 0.0 |
| Rv0950ko | -0.823 | -0.262 |
| Rv1096ko | 1.288 | 0.0 |
| Rv3684ko | -1.877 | -0.776 |
| delta_otsA_trehalose | 0.066 | -0.05 |