Top 10 genes with highest correlation to Rv1939/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1123c/bpoB | (cc=0.5179) | info on Rv1123c/bpoB |
| Rv2383c/mbtB | (cc=0.4955) | info on Rv2383c/mbtB |
| Rv1064c/lpqV | (cc=0.4927) | info on Rv1064c/lpqV |
| Rv3074/- | (cc=0.4927) | info on Rv3074/- |
| Rv2297/- | (cc=0.4853) | info on Rv2297/- |
| Rv3069/- | (cc=0.4849) | info on Rv3069/- |
| Rv2980/- | (cc=0.4741) | info on Rv2980/- |
| Rv2631/- | (cc=0.4731) | info on Rv2631/- |
| Rv2250A/- | (cc=0.4726) | info on Rv2250A/- |
| Rv2604c/snoP | (cc=0.467) | info on Rv2604c/snoP |
Correlation of Rv1939/- with Rv2604c/snoP
Normalized LFCs for Rv1939/-:
(description and provenance of datasets)
| Rv1939/- | Rv2604c/snoP | |
| Fe_supp_jason_reseq | -1.937 | -1.279 |
| low_pH_jason_reseq | 1.032 | 0.94 |
| NO_jason_reseq | 0.383 | -0.244 |
| B6_jason_reseq | -0.487 | -4.081 |
| MHCII_jason_reseq | -0.671 | -3.594 |
| Isoniazid02 | 1.014 | 0.998 |
| Rifampicin4 | 1.097 | 0.509 |
| Ethambutol3 | 0.223 | -0.263 |
| Meropenem3 | 1.052 | -0.092 |
| Vancomycin16 | -0.106 | 0.806 |
| Rv2680_day32 | 1.99 | 0.0 |
| H37Rv_KO_MarP | -0.107 | -0.61 |
| hypoxia_3wks | -0.459 | 0.566 |
| hypoxia_6wks | -1.244 | -0.741 |
| glycerol | -1.309 | -4.362 |
| cholesterol | -0.218 | -3.129 |
| AJ | 0.099 | -5.012 |
| Bibs02 | -2.906 | -3.95 |
| Bibs02c | -1.161 | -4.52 |
| BL6 | -3.238 | -2.702 |
| BL6a | -1.35 | -4.081 |
| BXD01 | -0.888 | -2.262 |
| BXD010 | -3.071 | -1.711 |
| BXD011 | -1.418 | -2.752 |
| BXD03 | -2.669 | -2.921 |
| BXD04 | -1.917 | -2.548 |
| BXD05 | -0.85 | -2.773 |
| BXD06 | -2.122 | -2.75 |
| BXD07 | -2.442 | -2.727 |
| BXD08 | -3.189 | -2.873 |
| BXD09 | -2.695 | -2.65 |
| CAST | 0.232 | -4.343 |
| CCcont | -3.716 | -0.211 |
| DS01 | -1.571 | -5.102 |
| DS02 | -0.739 | -4.698 |
| DS04 | -1.528 | -3.238 |
| DS0c | 0.643 | -4.686 |
| GP01 | -2.556 | -2.133 |
| GP02 | -2.154 | -1.797 |
| GP0c | -2.727 | -2.01 |
| NOD | -1.115 | -4.852 |
| NZO | 0.468 | -4.309 |
| PWK | 0.86 | -3.406 |
| H37Rv_KO_CtpC | -0.901 | -3.2 |
| H37Rv_KO_CtpD | -0.298 | -1.421 |
| H37Rv_KO_Rv1272 | -0.68 | -3.046 |
| H37Rv_KO_SugABC | -0.17 | 0.415 |
| H37Rv_KO_MbtN | 0.312 | -2.03 |
| Trans05 | 0.183 | -2.823 |
| macrophage_unactivated | 2.781 | -0.114 |
| IL1 | 0.0 | 0.071 |
| Rapamycin | -0.491 | 0.107 |
| Tcell | 3.617 | 0.411 |
| GMCSF | 0.729 | 0.359 |
| IFNab | -1.333 | 0.574 |
| IFNg | 0.567 | -0.51 |
| IFNg_GMCSF1 | 1.423 | -0.352 |
| Rv1432_day32 | 0.087 | 0.0 |
| Rv1565c_day32 | 1.309 | 0.0 |
| secA2_input | 2.408 | 0.65 |
| delta_Rv3594 | -2.533 | -0.263 |
| delta_Rv3717 | -0.881 | -0.104 |
| delta_Rv3811 | -0.912 | 0.763 |
| delta_Rv0954 | -1.828 | -2.605 |
| PonA1 | -2.246 | -1.332 |
| EccD1_KO | 2.973 | 1.519 |
| EspI_KO | 3.254 | 2.236 |
| PE35_KO | 1.881 | 1.683 |
| PPE68_KO | 3.257 | 1.014 |
| glycerol2 | -3.357 | -2.418 |
| lignocerate | -2.175 | -2.102 |
| oleate | -1.26 | -3.199 |
| phosphatidylcholine | -1.613 | -1.385 |
| acetate | -1.81 | -2.002 |
| glucAc | -3.434 | -1.538 |
| Rv0950ko | -0.823 | 0.513 |
| Rv1096ko | 1.288 | 1.855 |
| Rv3684ko | -1.877 | 0.684 |
| delta_otsA_trehalose | 0.066 | 0.637 |