Top 10 genes with highest correlation to Rv1929c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1780/- | (cc=0.4605) | info on Rv1780/- |
| Rv2266/cyp124 | (cc=0.3777) | info on Rv2266/cyp124 |
| Rv0644c/mmaA2 | (cc=0.3745) | info on Rv0644c/mmaA2 |
| Rv3181c/- | (cc=0.3703) | info on Rv3181c/- |
| Rv1554/frdC | (cc=0.3601) | info on Rv1554/frdC |
| Rv1552/frdA | (cc=0.3579) | info on Rv1552/frdA |
| Rv1058/fadD14 | (cc=0.355) | info on Rv1058/fadD14 |
| Rv0088/- | (cc=0.3404) | info on Rv0088/- |
| Rv2173/idsA2 | (cc=0.3362) | info on Rv2173/idsA2 |
| Rv3112/moaD1 | (cc=0.3346) | info on Rv3112/moaD1 |
Correlation of Rv1929c/- with Rv1780/-
Normalized LFCs for Rv1929c/-:
(description and provenance of datasets)
| Rv1929c/- | Rv1780/- | |
| Fe_supp_jason_reseq | -1.299 | -1.778 |
| low_pH_jason_reseq | 0.142 | -0.34 |
| NO_jason_reseq | -0.845 | -2.084 |
| B6_jason_reseq | -0.601 | -3.549 |
| MHCII_jason_reseq | 0.576 | -0.977 |
| Isoniazid02 | 0.167 | 2.506 |
| Rifampicin4 | -0.054 | -0.639 |
| Ethambutol3 | 0.392 | 1.978 |
| Meropenem3 | -0.073 | 0.727 |
| Vancomycin16 | 0.106 | -0.491 |
| Rv2680_day32 | 1.782 | 1.835 |
| H37Rv_KO_MarP | 0.512 | -0.267 |
| hypoxia_3wks | 1.747 | 1.288 |
| hypoxia_6wks | 2.464 | 3.454 |
| glycerol | 0.521 | 2.188 |
| cholesterol | 0.898 | 2.714 |
| AJ | 0.165 | -0.768 |
| Bibs02 | 0.216 | 1.197 |
| Bibs02c | -0.182 | 1.17 |
| BL6 | -0.806 | 1.216 |
| BL6a | 0.178 | 1.807 |
| BXD01 | 1.214 | 2.028 |
| BXD010 | 0.441 | 1.29 |
| BXD011 | 1.22 | 3.362 |
| BXD03 | 0.775 | 1.659 |
| BXD04 | -0.18 | 2.619 |
| BXD05 | -0.742 | 1.815 |
| BXD06 | 0.812 | 3.056 |
| BXD07 | 1.003 | 1.865 |
| BXD08 | -0.086 | 1.959 |
| BXD09 | 0.98 | 2.253 |
| CAST | -0.148 | -1.922 |
| CCcont | -1.246 | 0.954 |
| DS01 | 0.098 | 0.435 |
| DS02 | -0.29 | -1.03 |
| DS04 | -0.97 | 0.232 |
| DS0c | 0.195 | 0.74 |
| GP01 | 1.263 | 2.552 |
| GP02 | 0.686 | 2.909 |
| GP0c | -0.027 | 2.635 |
| NOD | 0.225 | -1.01 |
| NZO | 0.397 | -0.123 |
| PWK | -0.02 | -1.451 |
| H37Rv_KO_CtpC | -0.581 | 1.377 |
| H37Rv_KO_CtpD | 0.064 | -0.826 |
| H37Rv_KO_Rv1272 | 0.598 | 1.908 |
| H37Rv_KO_SugABC | 1.188 | 2.077 |
| H37Rv_KO_MbtN | -1.162 | 3.96 |
| Trans05 | 1.007 | 2.432 |
| macrophage_unactivated | 1.228 | -0.189 |
| IL1 | -0.988 | -1.264 |
| Rapamycin | 0.436 | -0.85 |
| Tcell | 1.193 | 2.444 |
| GMCSF | -0.639 | -1.009 |
| IFNab | -1.007 | 0.641 |
| IFNg | -0.647 | -1.732 |
| IFNg_GMCSF1 | -1.48 | -3.126 |
| Rv1432_day32 | -0.279 | 2.211 |
| Rv1565c_day32 | 0.013 | 1.35 |
| secA2_input | -1.191 | -1.45 |
| delta_Rv3594 | 0.835 | 1.334 |
| delta_Rv3717 | -0.048 | 2.956 |
| delta_Rv3811 | 0.754 | 1.866 |
| delta_Rv0954 | -0.672 | -1.335 |
| PonA1 | -1.111 | -2.652 |
| EccD1_KO | -0.418 | -2.993 |
| EspI_KO | -0.508 | -2.21 |
| PE35_KO | 0.54 | -2.634 |
| PPE68_KO | 1.952 | -2.102 |
| glycerol2 | -0.497 | 0.483 |
| lignocerate | 4.317 | 0.36 |
| oleate | -0.459 | 0.034 |
| phosphatidylcholine | -0.528 | 0.653 |
| acetate | -1.503 | -0.374 |
| glucAc | -1.255 | -0.518 |
| Rv0950ko | -0.323 | -2.783 |
| Rv1096ko | -2.337 | -3.685 |
| Rv3684ko | -2.538 | -2.731 |
| delta_otsA_trehalose | -0.719 | -1.034 |