Top 10 genes with highest correlation to Rv1904/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3767c/- | (cc=0.4995) | info on Rv3767c/- |
| Rv2268c/cyp128 | (cc=0.4679) | info on Rv2268c/cyp128 |
| Rv0338c/- | (cc=0.4656) | info on Rv0338c/- |
| Rv2443/dctA | (cc=0.4579) | info on Rv2443/dctA |
| Rv1372/- | (cc=0.4402) | info on Rv1372/- |
| Rv1770/- | (cc=0.4373) | info on Rv1770/- |
| Rv0320/- | (cc=0.436) | info on Rv0320/- |
| Rv3839/- | (cc=0.431) | info on Rv3839/- |
| Rv2090/- | (cc=0.4169) | info on Rv2090/- |
| Rv2431c/PE25 | (cc=0.4042) | info on Rv2431c/PE25 |
Correlation of Rv1904/- with Rv2268c/cyp128
Normalized LFCs for Rv1904/-:
(description and provenance of datasets)
| Rv1904/- | Rv2268c/cyp128 | |
| Fe_supp_jason_reseq | -0.229 | -0.906 |
| low_pH_jason_reseq | -0.962 | -0.196 |
| NO_jason_reseq | -0.675 | -0.714 |
| B6_jason_reseq | -0.878 | -0.834 |
| MHCII_jason_reseq | -0.527 | -1.068 |
| Isoniazid02 | -0.476 | -0.105 |
| Rifampicin4 | -0.19 | -0.298 |
| Ethambutol3 | -0.139 | -0.134 |
| Meropenem3 | -0.285 | 0.875 |
| Vancomycin16 | -0.491 | 0.0 |
| Rv2680_day32 | 0.919 | -0.874 |
| H37Rv_KO_MarP | 0.097 | -0.11 |
| hypoxia_3wks | 0.195 | -0.518 |
| hypoxia_6wks | -0.09 | -0.161 |
| glycerol | 0.336 | 1.434 |
| cholesterol | 2.757 | 6.0 |
| AJ | 0.736 | 0.632 |
| Bibs02 | 0.254 | 0.792 |
| Bibs02c | -0.12 | 1.299 |
| BL6 | 0.867 | 1.26 |
| BL6a | 0.451 | 0.623 |
| BXD01 | 0.113 | 0.489 |
| BXD010 | -0.15 | 0.0 |
| BXD011 | 0.31 | 0.29 |
| BXD03 | 0.358 | 1.271 |
| BXD04 | 0.133 | -0.408 |
| BXD05 | 0.481 | 0.814 |
| BXD06 | 0.367 | 0.334 |
| BXD07 | 0.549 | 0.377 |
| BXD08 | -0.413 | 0.648 |
| BXD09 | 0.478 | 0.527 |
| CAST | 0.355 | 1.039 |
| CCcont | -0.517 | 0.082 |
| DS01 | -0.034 | 0.065 |
| DS02 | 0.555 | 1.022 |
| DS04 | -0.687 | -1.248 |
| DS0c | -0.077 | 1.095 |
| GP01 | 0.336 | -0.802 |
| GP02 | 0.741 | 1.79 |
| GP0c | -0.042 | -0.836 |
| NOD | 0.952 | 1.595 |
| NZO | 0.572 | 1.329 |
| PWK | 0.399 | 0.108 |
| H37Rv_KO_CtpC | 0.487 | -0.473 |
| H37Rv_KO_CtpD | 0.476 | 1.684 |
| H37Rv_KO_Rv1272 | 0.993 | 1.022 |
| H37Rv_KO_SugABC | -0.662 | 1.209 |
| H37Rv_KO_MbtN | 0.325 | 0.933 |
| Trans05 | 0.138 | 0.982 |
| macrophage_unactivated | 0.335 | -0.354 |
| IL1 | -0.214 | 0.308 |
| Rapamycin | 0.381 | -0.718 |
| Tcell | 0.163 | 0.45 |
| GMCSF | 0.689 | 0.774 |
| IFNab | 0.012 | -0.707 |
| IFNg | 0.361 | -0.299 |
| IFNg_GMCSF1 | 0.6 | -0.735 |
| Rv1432_day32 | 0.321 | 0.287 |
| Rv1565c_day32 | 0.145 | 0.602 |
| secA2_input | -0.352 | -0.146 |
| delta_Rv3594 | -0.531 | 0.912 |
| delta_Rv3717 | -0.122 | 0.0 |
| delta_Rv3811 | -0.22 | 0.049 |
| delta_Rv0954 | -0.771 | -0.23 |
| PonA1 | 0.067 | -0.039 |
| EccD1_KO | -0.059 | -1.059 |
| EspI_KO | 0.362 | -0.168 |
| PE35_KO | -0.321 | 0.904 |
| PPE68_KO | -1.005 | 0.442 |
| glycerol2 | -0.21 | 0.144 |
| lignocerate | -0.242 | -0.346 |
| oleate | 0.102 | -0.483 |
| phosphatidylcholine | -0.22 | -0.132 |
| acetate | -0.342 | -0.183 |
| glucAc | -0.079 | -0.565 |
| Rv0950ko | 0.7 | -0.808 |
| Rv1096ko | -0.802 | -0.808 |
| Rv3684ko | -0.691 | -0.783 |
| delta_otsA_trehalose | 2.548 | -0.838 |