Top 10 genes with highest correlation to Rv1888c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3738c/PPE66 | (cc=0.5613) | info on Rv3738c/PPE66 |
| Rv0194/- | (cc=0.536) | info on Rv0194/- |
| Rv3740c/- | (cc=0.481) | info on Rv3740c/- |
| Rv1013/pks16 | (cc=0.4725) | info on Rv1013/pks16 |
| Rv2789c/fadE21 | (cc=0.4674) | info on Rv2789c/fadE21 |
| Rv3823c/mmpL8 | (cc=0.4646) | info on Rv3823c/mmpL8 |
| Rv3780/- | (cc=0.4598) | info on Rv3780/- |
| Rv2151c/ftsQ | (cc=0.4569) | info on Rv2151c/ftsQ |
| Rv1981c/nrdF1 | (cc=0.4555) | info on Rv1981c/nrdF1 |
| Rv2390c/- | (cc=0.45) | info on Rv2390c/- |
Correlation of Rv1888c/- with Rv3780/-
Normalized LFCs for Rv1888c/-:
(description and provenance of datasets)
| Rv1888c/- | Rv3780/- | |
| Fe_supp_jason_reseq | 0.489 | 0.0 |
| low_pH_jason_reseq | -0.756 | 0.0 |
| NO_jason_reseq | 0.016 | 0.0 |
| B6_jason_reseq | -0.92 | 0.0 |
| MHCII_jason_reseq | -0.144 | 0.0 |
| Isoniazid02 | -0.562 | -0.383 |
| Rifampicin4 | -0.544 | -0.341 |
| Ethambutol3 | -0.328 | -0.153 |
| Meropenem3 | -1.072 | -0.315 |
| Vancomycin16 | -0.424 | -0.698 |
| Rv2680_day32 | 0.996 | 0.0 |
| H37Rv_KO_MarP | 0.73 | 1.936 |
| hypoxia_3wks | -0.072 | -1.049 |
| hypoxia_6wks | -0.449 | -0.549 |
| glycerol | -0.884 | -0.202 |
| cholesterol | -0.623 | 0.659 |
| AJ | -0.583 | -0.232 |
| Bibs02 | -0.31 | -0.183 |
| Bibs02c | -0.332 | 0.527 |
| BL6 | 0.253 | 0.569 |
| BL6a | 0.154 | 0.346 |
| BXD01 | 0.154 | 0.0 |
| BXD010 | 0.045 | 0.0 |
| BXD011 | 0.482 | 0.727 |
| BXD03 | -0.043 | -0.135 |
| BXD04 | 0.039 | 0.0 |
| BXD05 | -0.067 | 0.0 |
| BXD06 | 0.109 | 0.0 |
| BXD07 | 0.186 | 0.0 |
| BXD08 | -0.171 | 0.521 |
| BXD09 | 0.221 | 0.128 |
| CAST | -0.769 | -0.23 |
| CCcont | 0.103 | 1.934 |
| DS01 | -0.351 | -0.236 |
| DS02 | -0.181 | -0.217 |
| DS04 | 0.214 | 0.0 |
| DS0c | 0.556 | 1.354 |
| GP01 | 0.31 | 0.0 |
| GP02 | 1.113 | -0.083 |
| GP0c | 0.133 | 0.0 |
| NOD | -0.133 | -0.225 |
| NZO | -0.691 | -0.199 |
| PWK | -0.271 | 0.342 |
| H37Rv_KO_CtpC | -0.105 | 1.759 |
| H37Rv_KO_CtpD | 0.7 | 0.221 |
| H37Rv_KO_Rv1272 | -0.471 | 0.553 |
| H37Rv_KO_SugABC | 0.097 | 0.0 |
| H37Rv_KO_MbtN | 0.31 | 0.18 |
| Trans05 | -0.545 | 0.0 |
| macrophage_unactivated | 0.701 | 0.83 |
| IL1 | -0.294 | 0.0 |
| Rapamycin | -0.285 | 0.0 |
| Tcell | -0.098 | 0.0 |
| GMCSF | -0.364 | 0.0 |
| IFNab | -0.32 | 0.0 |
| IFNg | -0.494 | 0.369 |
| IFNg_GMCSF1 | -0.625 | 0.0 |
| Rv1432_day32 | 0.532 | 0.052 |
| Rv1565c_day32 | -0.158 | 0.0 |
| secA2_input | -0.269 | -0.568 |
| delta_Rv3594 | -0.324 | 0.281 |
| delta_Rv3717 | -0.084 | 0.232 |
| delta_Rv3811 | -0.349 | -0.315 |
| delta_Rv0954 | 0.393 | -0.981 |
| PonA1 | 0.017 | -0.53 |
| EccD1_KO | -0.391 | -0.921 |
| EspI_KO | -0.596 | -0.799 |
| PE35_KO | -0.362 | -0.254 |
| PPE68_KO | -0.346 | 1.59 |
| glycerol2 | 0.722 | 1.684 |
| lignocerate | 0.522 | 2.097 |
| oleate | 0.751 | 0.0 |
| phosphatidylcholine | 0.829 | 1.499 |
| acetate | 0.588 | 3.004 |
| glucAc | 0.241 | 2.859 |
| Rv0950ko | 0.473 | 0.621 |
| Rv1096ko | -0.232 | 0.323 |
| Rv3684ko | -0.252 | -0.377 |
| delta_otsA_trehalose | -1.003 | -3.775 |