Top 10 genes with highest correlation to Rv1888c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3738c/PPE66 | (cc=0.5613) | info on Rv3738c/PPE66 |
| Rv0194/- | (cc=0.536) | info on Rv0194/- |
| Rv3740c/- | (cc=0.481) | info on Rv3740c/- |
| Rv1013/pks16 | (cc=0.4725) | info on Rv1013/pks16 |
| Rv2789c/fadE21 | (cc=0.4674) | info on Rv2789c/fadE21 |
| Rv3823c/mmpL8 | (cc=0.4646) | info on Rv3823c/mmpL8 |
| Rv3780/- | (cc=0.4598) | info on Rv3780/- |
| Rv2151c/ftsQ | (cc=0.4569) | info on Rv2151c/ftsQ |
| Rv1981c/nrdF1 | (cc=0.4555) | info on Rv1981c/nrdF1 |
| Rv2390c/- | (cc=0.45) | info on Rv2390c/- |
Correlation of Rv1888c/- with Rv0194/-
Normalized LFCs for Rv1888c/-:
(description and provenance of datasets)
| Rv1888c/- | Rv0194/- | |
| Fe_supp_jason_reseq | 0.489 | -0.058 |
| low_pH_jason_reseq | -0.756 | -0.393 |
| NO_jason_reseq | 0.016 | 0.037 |
| B6_jason_reseq | -0.92 | -0.047 |
| MHCII_jason_reseq | -0.144 | -0.046 |
| Isoniazid02 | -0.562 | -0.858 |
| Rifampicin4 | -0.544 | 0.203 |
| Ethambutol3 | -0.328 | -0.409 |
| Meropenem3 | -1.072 | -1.028 |
| Vancomycin16 | -0.424 | -0.464 |
| Rv2680_day32 | 0.996 | 0.181 |
| H37Rv_KO_MarP | 0.73 | 0.456 |
| hypoxia_3wks | -0.072 | 0.056 |
| hypoxia_6wks | -0.449 | 0.115 |
| glycerol | -0.884 | 0.0 |
| cholesterol | -0.623 | -0.104 |
| AJ | -0.583 | 0.111 |
| Bibs02 | -0.31 | 0.0 |
| Bibs02c | -0.332 | 0.035 |
| BL6 | 0.253 | 0.133 |
| BL6a | 0.154 | 0.089 |
| BXD01 | 0.154 | -0.121 |
| BXD010 | 0.045 | 0.049 |
| BXD011 | 0.482 | 0.049 |
| BXD03 | -0.043 | -0.036 |
| BXD04 | 0.039 | 0.234 |
| BXD05 | -0.067 | -0.11 |
| BXD06 | 0.109 | 0.076 |
| BXD07 | 0.186 | 0.159 |
| BXD08 | -0.171 | 0.043 |
| BXD09 | 0.221 | -0.027 |
| CAST | -0.769 | 0.067 |
| CCcont | 0.103 | -0.01 |
| DS01 | -0.351 | -0.046 |
| DS02 | -0.181 | 0.071 |
| DS04 | 0.214 | 0.056 |
| DS0c | 0.556 | 0.481 |
| GP01 | 0.31 | 0.584 |
| GP02 | 1.113 | 0.367 |
| GP0c | 0.133 | -0.07 |
| NOD | -0.133 | 0.164 |
| NZO | -0.691 | 0.498 |
| PWK | -0.271 | 0.266 |
| H37Rv_KO_CtpC | -0.105 | 0.053 |
| H37Rv_KO_CtpD | 0.7 | 1.262 |
| H37Rv_KO_Rv1272 | -0.471 | -0.274 |
| H37Rv_KO_SugABC | 0.097 | 0.454 |
| H37Rv_KO_MbtN | 0.31 | 0.423 |
| Trans05 | -0.545 | 0.303 |
| macrophage_unactivated | 0.701 | -0.016 |
| IL1 | -0.294 | -0.131 |
| Rapamycin | -0.285 | -0.193 |
| Tcell | -0.098 | -0.339 |
| GMCSF | -0.364 | 0.063 |
| IFNab | -0.32 | 0.115 |
| IFNg | -0.494 | 0.051 |
| IFNg_GMCSF1 | -0.625 | 0.148 |
| Rv1432_day32 | 0.532 | 0.194 |
| Rv1565c_day32 | -0.158 | -0.469 |
| secA2_input | -0.269 | 0.025 |
| delta_Rv3594 | -0.324 | -0.304 |
| delta_Rv3717 | -0.084 | -0.214 |
| delta_Rv3811 | -0.349 | -0.173 |
| delta_Rv0954 | 0.393 | -0.275 |
| PonA1 | 0.017 | -0.54 |
| EccD1_KO | -0.391 | -0.168 |
| EspI_KO | -0.596 | -0.362 |
| PE35_KO | -0.362 | -0.519 |
| PPE68_KO | -0.346 | -0.518 |
| glycerol2 | 0.722 | 0.61 |
| lignocerate | 0.522 | 0.496 |
| oleate | 0.751 | 0.564 |
| phosphatidylcholine | 0.829 | 0.335 |
| acetate | 0.588 | 0.098 |
| glucAc | 0.241 | -0.025 |
| Rv0950ko | 0.473 | 0.507 |
| Rv1096ko | -0.232 | -0.341 |
| Rv3684ko | -0.252 | 0.0 |
| delta_otsA_trehalose | -1.003 | -0.205 |