Top 10 genes with highest correlation to Rv1800/PPE28:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2958c/- | (cc=0.5573) | info on Rv2958c/- |
| Rv2770c/PPE44 | (cc=0.5291) | info on Rv2770c/PPE44 |
| Rv1552/frdA | (cc=0.5017) | info on Rv1552/frdA |
| Rv1951c/- | (cc=0.5009) | info on Rv1951c/- |
| Rv3238c/- | (cc=0.4983) | info on Rv3238c/- |
| Rv1920/- | (cc=0.4866) | info on Rv1920/- |
| Rv2127/ansP1 | (cc=0.4759) | info on Rv2127/ansP1 |
| Rv1871c/- | (cc=0.4722) | info on Rv1871c/- |
| Rv1992c/ctpG | (cc=0.4688) | info on Rv1992c/ctpG |
| Rv3290c/lat | (cc=0.4666) | info on Rv3290c/lat |
Correlation of Rv1800/PPE28 with Rv1871c/-
Normalized LFCs for Rv1800/PPE28:
(description and provenance of datasets)
| Rv1800/PPE28 | Rv1871c/- | |
| Fe_supp_jason_reseq | -0.786 | -0.912 |
| low_pH_jason_reseq | -0.224 | -0.53 |
| NO_jason_reseq | -0.123 | 0.473 |
| B6_jason_reseq | -0.969 | -1.258 |
| MHCII_jason_reseq | -0.668 | -1.425 |
| Isoniazid02 | 0.907 | 1.439 |
| Rifampicin4 | 0.162 | 0.479 |
| Ethambutol3 | 1.313 | 0.428 |
| Meropenem3 | 0.637 | 0.461 |
| Vancomycin16 | 0.263 | 0.456 |
| Rv2680_day32 | -1.145 | -0.682 |
| H37Rv_KO_MarP | -0.168 | -0.285 |
| hypoxia_3wks | -0.199 | 0.75 |
| hypoxia_6wks | 0.157 | 0.073 |
| glycerol | -0.532 | -0.992 |
| cholesterol | -0.159 | -0.324 |
| AJ | 0.358 | -0.239 |
| Bibs02 | 0.282 | -0.36 |
| Bibs02c | 0.244 | -1.199 |
| BL6 | 0.146 | -0.055 |
| BL6a | -0.126 | -0.277 |
| BXD01 | -0.096 | -0.095 |
| BXD010 | 0.111 | 0.395 |
| BXD011 | 0.618 | 0.603 |
| BXD03 | -0.441 | -0.029 |
| BXD04 | 0.069 | -0.269 |
| BXD05 | -0.199 | 0.71 |
| BXD06 | -0.273 | 0.057 |
| BXD07 | -0.02 | 0.007 |
| BXD08 | -0.032 | 0.157 |
| BXD09 | -0.192 | -0.145 |
| CAST | 0.189 | 0.37 |
| CCcont | -0.043 | -0.471 |
| DS01 | -0.286 | -0.039 |
| DS02 | -0.095 | -0.501 |
| DS04 | 0.291 | -0.177 |
| DS0c | -0.308 | -0.277 |
| GP01 | 0.845 | 1.05 |
| GP02 | 0.832 | 0.11 |
| GP0c | 0.124 | 0.703 |
| NOD | 0.052 | 0.485 |
| NZO | 0.308 | -0.688 |
| PWK | 0.303 | -0.604 |
| H37Rv_KO_CtpC | 0.486 | 0.112 |
| H37Rv_KO_CtpD | 0.415 | 0.495 |
| H37Rv_KO_Rv1272 | 0.684 | 0.893 |
| H37Rv_KO_SugABC | 0.616 | 0.349 |
| H37Rv_KO_MbtN | 0.574 | 1.584 |
| Trans05 | 0.768 | 0.698 |
| macrophage_unactivated | 0.436 | 0.625 |
| IL1 | 0.0 | -0.403 |
| Rapamycin | -0.049 | 0.476 |
| Tcell | 0.153 | -0.345 |
| GMCSF | 0.227 | 0.869 |
| IFNab | 0.097 | 0.686 |
| IFNg | 0.107 | -0.168 |
| IFNg_GMCSF1 | 0.148 | 0.292 |
| Rv1432_day32 | 0.095 | -0.485 |
| Rv1565c_day32 | 0.068 | -0.009 |
| secA2_input | -0.895 | -0.994 |
| delta_Rv3594 | 0.716 | -1.137 |
| delta_Rv3717 | -0.042 | -1.158 |
| delta_Rv3811 | 0.223 | -0.758 |
| delta_Rv0954 | 0.327 | -0.908 |
| PonA1 | 0.089 | -1.138 |
| EccD1_KO | -0.303 | -0.306 |
| EspI_KO | -0.208 | 0.915 |
| PE35_KO | 0.58 | -0.184 |
| PPE68_KO | 0.435 | -0.074 |
| glycerol2 | 0.695 | 0.265 |
| lignocerate | 0.631 | -0.578 |
| oleate | 0.503 | 0.698 |
| phosphatidylcholine | 0.748 | 0.37 |
| acetate | 0.0 | -0.836 |
| glucAc | 0.268 | -1.325 |
| Rv0950ko | 0.087 | -0.874 |
| Rv1096ko | -0.356 | -1.378 |
| Rv3684ko | -0.37 | -0.707 |
| delta_otsA_trehalose | 0.132 | 0.11 |